| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,820,508 – 19,820,604 |
| Length | 96 |
| Max. P | 0.837709 |
| Location | 19,820,508 – 19,820,604 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 83.57 |
| Shannon entropy | 0.29392 |
| G+C content | 0.45908 |
| Mean single sequence MFE | -25.94 |
| Consensus MFE | -18.42 |
| Energy contribution | -18.42 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.837709 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19820508 96 - 21146708 GUACCCGUGAGC-CGAGUGC-CGUGCACAUGCACAUGUACGACCACUUAUUCAGAACCUAAUGAGGUAGUUUUAACUGCAAACGUACAUGCCAGUACA ((((.((((.((-((.....-)).)).))))..((((((((....((((((........))))))(((((....)))))...))))))))...)))). ( -28.30, z-score = -2.26, R) >droSim1.chr2R 18372898 96 - 19596830 GUACCCGUGAGC-CGAGUGC-CGUGCACAUGCACAUGUACGACCACUUAUUCAGAACCUAAUGAGGUAGUUUUAACUGCAAACGUACAUGCCAGCACA .....(....).-...((((-.((((....))))(((((((....((((((........))))))(((((....)))))...)))))))....)))). ( -27.80, z-score = -2.02, R) >droSec1.super_9 3104478 96 - 3197100 GUACCCGUGAGC-CGAGUGC-CGUGCACAUGCACAUGUACGACCACUUAUUCAGAACCUAAUGAGGUAGUUUUAACUGCAAACGUACAUGCCAGCACA .....(....).-...((((-.((((....))))(((((((....((((((........))))))(((((....)))))...)))))))....)))). ( -27.80, z-score = -2.02, R) >droYak2.chr2R 19798040 96 - 21139217 GUACCCGUGAGC-CGAGUAC-CGUGCACAUGCACAUGUACGACCACUUAUUCAGAACCUAAUGAGGUAGUUUUAACUGCAAACGUACAUGCCAGCACA ((((.((.....-)).))))-.((((...((..((((((((....((((((........))))))(((((....)))))...)))))))).)))))). ( -27.10, z-score = -2.31, R) >dp4.chr3 1762109 95 - 19779522 AUACUCGUAUGUAUGCAUUCAGGUACUUACUCACAUGCACAUACAUACAUACGAAAUCUAAUGAGGUAGUUUUAACUGCAUAUGAACACACUUGC--- ....((((((((((((((...(((....)))...)))))......)))))))))...........(((((....)))))................--- ( -18.70, z-score = -1.04, R) >consensus GUACCCGUGAGC_CGAGUGC_CGUGCACAUGCACAUGUACGACCACUUAUUCAGAACCUAAUGAGGUAGUUUUAACUGCAAACGUACAUGCCAGCACA .....((((.((.((......)).)).))))..((((((((....((((((........))))))(((((....)))))...))))))))........ (-18.42 = -18.42 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:46:54 2011