Locus 5366

Sequence ID	dm3.chr2R
Location	19,810,138 – 19,810,232
Length	94
Max. P	0.981931

overview

Window 9

Location	19,810,138 – 19,810,232
Length	94
Sequences	13
Columns	111
Reading direction	forward
Mean pairwise identity	71.50
Shannon entropy	0.60099
G+C content	0.45807
Mean single sequence MFE	-25.73
Consensus MFE	-18.44
Energy contribution	-17.43
Covariance contribution	-1.01
Combinations/Pair	1.55
Mean z-score	-1.17
Structure conservation index	0.72
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	2.09
SVM RNA-class probability	0.981931
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 19810138 94 + 21146708
--------------GUAACAAAUCCUUCUCCCUCUU---CAGAUCGGUGGUAACAUUGAUAUCUGGUGGAUUGUCCACGACGGUGGUCUGCUCAUGUUGCUGCCCUUCCUG
--------------......................---..((..((..(((((((.((......((((.....))))(((....)))...)))))))))..))..))... ( -24.00, z-score =  -0.95, R)
>anoGam1.chr3L 16661793 109 - 41284009
CUAACGCGUCACCCCUUUUCUUUCUCCGAAACCCCUG--CAGAUUGCUGGAAACAUUGACAUCUGGUGGAUCGUGCACGACGGCGGGCUGCUGAUGCUGCUGCCGUUCCUG
....(((((((((...((((.......))))..((.(--(.....)).))..............)))))..))))...((((((((.(.((....)).))))))))).... ( -28.00, z-score =   0.26, R)
>droWil1.scaffold_180701 2724646 108 - 3904529
---UUUAUACACAUGUACUCUAUCCUCUAUCCUCUUAUUUAGAUUGGUGGCAACAUUGAUAUCUGGUGGAUCGUUCACGAUGGAGGUUUACUUAUGUUGUUGCCCUUCUUA
---.....(((((((........((((((((........(((((..(((....)))..)..))))(((((...)))))))))))))......)))).)))........... ( -24.94, z-score =  -1.32, R)
>droGri2.scaffold_15245 6562562 98 - 18325388
----------UUAAAUAACCAAUCAUUU-UAUUCUUG--AAGAUUGGUGGCAACAUUGAUAUUUGGUGGAUUGUUCAUGACGGUGGCUUGCUUAUGUUGCUGCCGUUCCUG
----------...(((.(((((...(((-((....))--)))((..(((....)))..))..)))))..)))......(((((..((..((....)).))..))))).... ( -25.80, z-score =  -1.73, R)
>droMoj3.scaffold_6496 14947174 100 + 26866924
-----------AUAGUUCAUUGACUGUUAUAUGUUUUUGUAGAUUGGUGGUAAUAUUGAUAUUUGGUGGAUCGUCCACGAUGGUGGCCUACUCAUGCUACUGCCAUUCCUG
-----------((((((....))))))..............((.(((..(((.(((.((......((((..((.((.....))))..))))))))).)))..))).))... ( -20.20, z-score =   0.75, R)
>droVir3.scaffold_12875 11953529 90 + 20611582
------------------AUAACCUGU-A-ACAAAUUU-UAGAUUGGUGGAAACAUUGAUAUUUGGUGGAUUGUUCAUGACGGCGGCCUUCUUAUGUUGCUGCCAUUCUUG
------------------....(.((.-(-(((((((.-...((..(((....)))..))....)))...))))))).)..((((((...(....)..))))))....... ( -20.80, z-score =  -1.02, R)
>droSim1.chr2R 18361968 94 + 19596830
--------------GUAACAUAUCCUUCUCCCUCUU---CAGAUCGGUGGCAACAUUGAUAUCUGGUGGAUUGUCCACGACGGUGGUCUGCUCAUGUUGCUGCCCUUCCUG
--------------(((((((......(..((((..---((((((((((....))))))..))))((((.....)))))).))..).......)))))))........... ( -27.32, z-score =  -1.70, R)
>droSec1.super_9 3094148 94 + 3197100
--------------GUAACAUAUCCUUCUCCCUCUU---CAGAUCGGUGGCAACAUUGAUAUCUGGUGGAUUGUCCACGACGGUGGUCUGCUCAUGUUGCUGCCCUUCCUG
--------------(((((((......(..((((..---((((((((((....))))))..))))((((.....)))))).))..).......)))))))........... ( -27.32, z-score =  -1.70, R)
>droYak2.chr2R 19787734 90 + 21139217
--------------GUAACAUGUCCUU----CUCUU---CAGAUCGGUGGCAACAUUGAUAUCUGGUGGAUUGUCCACGACGGUGGUCUGCUCAUGUUGCUGCCCUUCCUG
--------------((((((((.....----.....---((((((((((....))))))..))))(..(((..((......))..)))..).))))))))........... ( -29.40, z-score =  -2.26, R)
>droEre2.scaffold_4845 21182960 90 + 22589142
--------------UUAACAUGCUCUU----CUUCU---CAGAUCGGUGGCAACAUUGAUAUCUGGUGGAUUGUCCACGACGGUGGCCUGCUCAUGUUGCUGCCCUUCCUG
--------------.............----.....---((((((((((....))))))..))))((((.....))))...((..((..((....)).))..))....... ( -26.10, z-score =  -1.34, R)
>droAna3.scaffold_13266 5674287 100 + 19884421
----------UAACAAAUAUUAACUGU-AUGCUUCUCAACAGAUUGGUGGCAACAUCGACAUCUGGUGGAUUGUCCAUGACGGCGGCCUGCUCAUGUUGCUGCCGUUCUUG
----------.................-...........((((((((((....))))))..))))((((.....))))(((((((((..((....)).))))))))).... ( -31.60, z-score =  -2.36, R)
>dp4.chr3 1750902 98 + 19779522
-----------CUUGCCGAUUAAUUGU-AUACAAUUUU-CAGAUUGGUGGCAAUAUUGAUAUUUGGUGGAUAGUCCACGACGGAGGUUUGCUUAUGCUGCUGCCAUUCUUG
-----------......((..(((((.-...))))).)-)(((.(((..(((.(((........((..(((..(((.....))).)))..)).))).)))..))).))).. ( -24.50, z-score =  -0.93, R)
>droPer1.super_2 1938475 98 + 9036312
-----------CUUGCCGAUUAAUUGU-AUACAAUUUU-CAGAUUGGUGGCAAUAUUGAUAUUUGGUGGAUAGUCCACGACGGAGGUUUGCUUAUGCUGCUGCCAUUCUUG
-----------......((..(((((.-...))))).)-)(((.(((..(((.(((........((..(((..(((.....))).)))..)).))).)))..))).))).. ( -24.50, z-score =  -0.93, R)
>consensus
______________GUAACAUAUCCUU_AUACUCUU___CAGAUUGGUGGCAACAUUGAUAUCUGGUGGAUUGUCCACGACGGUGGUCUGCUCAUGUUGCUGCCCUUCCUG
.......................................((((((((((....))))))..))))((((.....))))...((((((..((....)).))))))....... (-18.44 = -17.43 +  -1.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:46:53 2011