| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,809,099 – 19,809,155 |
| Length | 56 |
| Max. P | 0.732005 |
| Location | 19,809,099 – 19,809,155 |
|---|---|
| Length | 56 |
| Sequences | 4 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 75.22 |
| Shannon entropy | 0.40863 |
| G+C content | 0.65917 |
| Mean single sequence MFE | -24.20 |
| Consensus MFE | -18.36 |
| Energy contribution | -18.93 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.732005 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19809099 56 - 21146708 ACGCCGCUCCGCUGCUGGCGUACCCGGCAGCGCAGCUACGCGG-AUUAGCCUAAGUC .(((.(((.(((((((((.....))))))))).)))...))).-............. ( -24.60, z-score = -1.39, R) >droSim1.chr3h_random 107940 56 + 1452968 GCGUCGCUGCGCUGCAGGCUAUGCCGGCAGCGCUGCUCUUCGA-CUUAGGCUAAGAA ..(((((.(((((((.(((...))).))))))).)).....))-)............ ( -22.50, z-score = -0.24, R) >droYak2.chrX_random 539170 56 - 1802292 GAGCCGCUCCGCUGCUGUCGUAUCCGGCAGCGCAGCUACGCGG-CUUAGCCUUCGAC (((((((...((((((((((....)))))..)))))...))))-))).......... ( -25.70, z-score = -2.09, R) >droEre2.scaffold_4855 7559 55 - 242605 --GCCGCUCCGCUGCUGGCGUAGCUGGCAGCGCAGCUACGCGGUUUUAGGUUUAGCC --((.(((.((((((..((...))..)))))).)))...))((((........)))) ( -24.00, z-score = -0.55, R) >consensus GCGCCGCUCCGCUGCUGGCGUAGCCGGCAGCGCAGCUACGCGG_CUUAGCCUAAGAC .....(((.(((((((((.....))))))))).)))..................... (-18.36 = -18.93 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:46:52 2011