| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,796,774 – 19,796,894 |
| Length | 120 |
| Max. P | 0.825074 |
| Location | 19,796,774 – 19,796,894 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.92 |
| Shannon entropy | 0.42712 |
| G+C content | 0.54393 |
| Mean single sequence MFE | -41.65 |
| Consensus MFE | -20.96 |
| Energy contribution | -24.22 |
| Covariance contribution | 3.25 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.825074 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19796774 120 - 21146708 CCAUCGAACUUGGUGGGUGUCUGGCCGAAAUGGGCCACUGCACCUGCGAUGUAUGCUCCACUUUCGGGCAGAGAUAAAGGCUGUUUCCGAUCUGUGGCGCUAAUCGCUCCGCACUCGCCG ...........(((((((((.(((((......)))))........(((((....((.((((..((((((((.........))))..))))...)))).))..)))))...))))))))). ( -47.40, z-score = -2.23, R) >droAna3.scaffold_13266 5668380 114 - 19884421 CUAUGGAAAUUAGUAGACGGCCAA--GAAAAAAAGAAAUGUCUUGAAAAAAUGCGC-CCAUUUCCAGUCAGAUA-AAAAACUGUUUUCGAUCUCGGGCGACAAUCGGUUUAUAAUCUU-- ............((((((.(.(((--((.....(....).)))))......(((((-((...((....(((...-.....))).....))....))))).))..).))))))......-- ( -19.70, z-score = 0.26, R) >droYak2.chr2R 19781807 120 - 21139217 CCAUCGAACUUAGUGGGUGACUGCCCGAAAUGGGCAAUUGCACCUGCGAUGUAUGCUCCACUUUGGGCCAGAGAUAAAGGCCGUUUCCGAUCUUUGGCGCUAAUCGCUCCGCACUCGCUG ..........(((((((((...(((((((.(((((((((((....)))))...))).))).)))))(((((((((...((......)).))))))))).......))....))))))))) ( -45.20, z-score = -2.75, R) >droEre2.scaffold_4845 21177091 114 - 22589142 CCAUCGAACUUAGUGGGUGACUGCCCGAAAUGGGCAACUGCACCUGCGAUGUAUGCUCCACUUUGGGGCAGAGAUAAUGGCUGUCCUCGAUCUCUGGCGCUAAUCGCCCCGCAC------ .......((...(..((((..(((((.....)))))....))))..)...))..(((((.....)))))((((((...((....))...))))))((((.....))))......------ ( -40.40, z-score = -1.57, R) >droSec1.super_9 3088383 120 - 3197100 CCAUCGAACUUGGUGGGUGUCUGCCCGAAAGGGGCCACUGCACCUGCGAUGUAUGCUCCACUUUCGGGCAGAGAUAAAGCCUGUUCCCGAUCUCUGGCGCUAAUCGCCCAGCACUCGCCG .....((((..(((..((.((((((((((((((((((.(((....))).))...)).)).)))))))))))).))...))).)))).(((...((((.((.....))))))...)))... ( -49.70, z-score = -2.97, R) >droSim1.chr2R 18356181 120 - 19596830 CCAUCGAACUUGGUGGGUGUCUGCCCGAAAUGGGCCACUGCACCUGCGAUGUAUGCUCCACUUUCGGGCAGAGAUAAAGCCUGUUCCCGAUCUCUGGCGCUAAUCGCCCAGCACUCGCCG .....((((..(((..((.((((((((((((((((((.(((....))).))...)).))).))))))))))).))...))).)))).(((...((((.((.....))))))...)))... ( -47.50, z-score = -2.94, R) >consensus CCAUCGAACUUAGUGGGUGUCUGCCCGAAAUGGGCAACUGCACCUGCGAUGUAUGCUCCACUUUCGGGCAGAGAUAAAGGCUGUUCCCGAUCUCUGGCGCUAAUCGCCCCGCACUCGCCG ...........((((((((.(((((((((((((((...((((.......)))).)).))).))))))))))........................((((.....))))...)))))))). (-20.96 = -24.22 + 3.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:46:49 2011