| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,775,867 – 3,775,974 |
| Length | 107 |
| Max. P | 0.664259 |
| Location | 3,775,867 – 3,775,974 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 88.75 |
| Shannon entropy | 0.20914 |
| G+C content | 0.48448 |
| Mean single sequence MFE | -27.50 |
| Consensus MFE | -21.54 |
| Energy contribution | -22.43 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.664259 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3775867 107 - 23011544 UAUCUUCUGGGCCGAGUGCUUACCGGGCCCCCAUAUGCACUUCAGUUUGCUUACAAAACACCGGCCAACAACAACAAACAA---GCCAGAAGAUGACGACGAAGAAAAGU----- (((((((((((((((((((.....((....))....)))))...((((.......))))..)))))........(......---).)))))))))...............----- ( -28.90, z-score = -2.54, R) >droSim1.chr2L 3730913 107 - 22036055 UAUCUUCUGGGCCGAGUGCUUACCGGGCCCCCAUAUCCACUUCAGUUUGCUUACAAAACACCGGCCAACAACAACAAACAA---GCCAGAAGAUGACGACGAAGAAAAGU----- ((((((((((((((((((..((..((....)).))..))))...((((.......))))..)))))........(......---).)))))))))...............----- ( -25.70, z-score = -1.78, R) >droSec1.super_5 1878827 102 - 5866729 UAUCUUCUGGGCCGAGUGCUUACCGGGCCCCCAUAUGCACUUCAGUUUGCUUACAAAACACCGGCCAACAACAACAAA--------CAGAAGAUGACGACGAAGAAAAGU----- (((((((((((((((((((.....((....))....)))))...((((.......))))..)))))............--------)))))))))...............----- ( -28.10, z-score = -2.68, R) >droYak2.chr2L 3777660 107 - 22324452 UAUCUUCUGGGCCGAGUGCUUACCGGGCCCCCAUAUGCACUUCAGUUUGCUUACAAAACACCGGCCAACAACAACAAACAA---GCCAGAAGAUGACGACGAAGAAAAGU----- (((((((((((((((((((.....((....))....)))))...((((.......))))..)))))........(......---).)))))))))...............----- ( -28.90, z-score = -2.54, R) >droEre2.scaffold_4929 3822011 107 - 26641161 UAUCUUCCGGGCCGAGUGCUUACCGGGCCCCCAUAUGCACUUCAGUUUGCUUACAAAACACCGGCCAACAACAACAAACAA---GCCAGAAGAUGACGACGAAGAAAAGU----- ..(((((((((((((((((.....((....))....)))))...((((.......))))..)))))...............---..((.....)).))..))))).....----- ( -24.70, z-score = -1.24, R) >droAna3.scaffold_12916 5846352 112 - 16180835 UAUCUUCUGGGCCUAGUG-GUAC--GGUCCCUAUAUGCACUUCAGUUUGCUUACAAAACACCAGCGAACAAAAACAAACAACAGGCCAGAAGACAGUGUGGGGGUGGGGUAUAUG (((((((((..((....)-)..)--))(((((((((...((((.(((((((...........))))))).........(....)....))))...))))))))).)))))).... ( -28.70, z-score = 0.27, R) >consensus UAUCUUCUGGGCCGAGUGCUUACCGGGCCCCCAUAUGCACUUCAGUUUGCUUACAAAACACCGGCCAACAACAACAAACAA___GCCAGAAGAUGACGACGAAGAAAAGU_____ ((((((((((...((((((.....((....))....))))))..(((.(((...........))).)))................)))))))))).................... (-21.54 = -22.43 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:14:38 2011