| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,735,859 – 19,735,975 |
| Length | 116 |
| Max. P | 0.500000 |
| Location | 19,735,859 – 19,735,975 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 128 |
| Reading direction | reverse |
| Mean pairwise identity | 84.95 |
| Shannon entropy | 0.20088 |
| G+C content | 0.53542 |
| Mean single sequence MFE | -33.56 |
| Consensus MFE | -21.06 |
| Energy contribution | -21.62 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2R 19735859 116 - 21146708 GCCUAGCAGCAGCCGUUGGCGUUGUCCUUGCAAUUCCAAUUGCCAUUG------------GCCAUCGCCAUCGCCAUCGCAGCAGCCACAUCCUUUUCCGUUGCCCAACUAGUUUGCUACGCUUUUUU ((.(((((((.(.((.(((((.((.((..(((((....)))))....)------------).)).))))).)).)...(((((................))))).......).)))))).))...... ( -31.19, z-score = -1.81, R) >droSim1.chr2R 18301715 128 - 19596830 GCCUAGCAGCAGCCGUUGGCGUUGUCCUUGCAAUUGCCAUUGCCAUUGGCCAUUGCCAACGCCAUCGCCAUCGUCAUCGCAGCAGCCACAUCCUUUACCGUUGCCCAACUAGUUUGCUACGCUUUUUU ((.(((((((.(.((.((((((((.....(((((.((((.......)))).))))))))))))).)).).........(((((................))))).......).)))))).))...... ( -38.89, z-score = -2.44, R) >droSec1.super_9 3027540 107 - 3197100 GCCUAGCAGCAGCCGUUGGCGUUGUCCUUGCAAUUGCCAUU-------------------GCCAACGCCAUCGCCAUCGCAGCAGU--CAUCCUUUACCGUUGCCCAACUAGUUUGCUUCGCUUUUUU ((..((((((.(.((.((((((((.....(((((....)))-------------------)))))))))).)).)...(((((.((--........)).))))).......).)))))..))...... ( -30.60, z-score = -2.41, R) >consensus GCCUAGCAGCAGCCGUUGGCGUUGUCCUUGCAAUUGCCAUUGCCAUUG____________GCCAUCGCCAUCGCCAUCGCAGCAGCCACAUCCUUUACCGUUGCCCAACUAGUUUGCUACGCUUUUUU ((.(((((((.((...(((((.((.....(((((....))))).................((....)))).)))))..)).(((((.............))))).......).)))))).))...... (-21.06 = -21.62 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:46:43 2011