| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,733,596 – 19,733,648 |
| Length | 52 |
| Max. P | 0.556992 |
| Location | 19,733,596 – 19,733,648 |
|---|---|
| Length | 52 |
| Sequences | 8 |
| Columns | 54 |
| Reading direction | reverse |
| Mean pairwise identity | 90.20 |
| Shannon entropy | 0.18343 |
| G+C content | 0.35167 |
| Mean single sequence MFE | -8.46 |
| Consensus MFE | -7.78 |
| Energy contribution | -7.09 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.556992 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19733596 52 - 21146708 UAAAGAGUUUUUGCGUAUGCUAUUAGUACAUGAACC--CAACAUACAAGACAAC ......(((((...(((((.................--...))))))))))... ( -3.75, z-score = 0.49, R) >droAna3.scaffold_13266 413414 54 - 19884421 UAAAGAGUUUUUGCGUGUGCUAUUAGUACAUGAAACAACAGCAUACGAAACAAC ......((((...((((((((.((.((.......)))).))))))))))))... ( -11.10, z-score = -1.59, R) >droPer1.super_2 8612337 52 + 9036312 UAAAGAGUUUUUGCGUGUGCUAUUAGUAUAUGAACA-ACAA-ACACGAAGCAAU ......((((((((((((((.....)))))))..))-).))-)).......... ( -8.00, z-score = -0.45, R) >dp4.chr3 19535352 52 + 19779522 UAAAGAGUUUUUGCGUGUGCUAUUAGUAUAUGAACA-ACAA-ACACGAAGCAAU ......((((((((((((((.....)))))))..))-).))-)).......... ( -8.00, z-score = -0.45, R) >droSim1.chr2R 18299494 52 - 19596830 UAAAGAGUUUUUGCGUGUGCUAUUAGUACAUGAACC--CAACAUACAAGACAAC ......(((....(((((((.....)))))))....--.)))............ ( -9.20, z-score = -1.51, R) >droSec1.super_9 3025329 52 - 3197100 UAAAGAGUUUUUGCGUGUGCUAUUAGUACAUGAACC--CAACAUACAAGACAAC ......(((....(((((((.....)))))))....--.)))............ ( -9.20, z-score = -1.51, R) >droYak2.chr2R 19716260 52 - 21139217 UAAAGAGUUUUUGCGUGUGCUAUUAGUACAUGAACC--CAACAUACAAGACAAC ......(((....(((((((.....)))))))....--.)))............ ( -9.20, z-score = -1.51, R) >droEre2.scaffold_4845 21111199 52 - 22589142 UAAAGAGUUUUUGCGUGUGCUAUUAGUACAUGAACC--CAACAUACAAGACAAC ......(((....(((((((.....)))))))....--.)))............ ( -9.20, z-score = -1.51, R) >consensus UAAAGAGUUUUUGCGUGUGCUAUUAGUACAUGAACC__CAACAUACAAGACAAC ......(((((..(((((((.....)))))))..............)))))... ( -7.78 = -7.09 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:46:42 2011