| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,726,110 – 19,726,166 |
| Length | 56 |
| Max. P | 0.703632 |
| Location | 19,726,110 – 19,726,166 |
|---|---|
| Length | 56 |
| Sequences | 5 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 95.06 |
| Shannon entropy | 0.08473 |
| G+C content | 0.30144 |
| Mean single sequence MFE | -7.91 |
| Consensus MFE | -5.59 |
| Energy contribution | -5.79 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.62 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.703632 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19726110 56 + 21146708 CAUAUUUAGGCGUAAG-AAAAACAUUGGAAACAGGAAUAUAUAAUUAAACGCAAAUU .........((((...-.......(((....)))..............))))..... ( -6.45, z-score = -2.84, R) >droSim1.chr2R 18291806 56 + 19596830 CAUACUUAGGCGUAAG-GAAAACAUUGGAAACAGGAAUAUAUAAUUAAACGCGAAUU .........((((..(-.....).(((....)))..............))))..... ( -7.40, z-score = -2.65, R) >droSec1.super_9 3017965 56 + 3197100 CAUACUUAGGCGUAAG-GAAAACAUUGGAAACAGGAAUAUAUAAUUAAACGCGAAUU .........((((..(-.....).(((....)))..............))))..... ( -7.40, z-score = -2.65, R) >droYak2.chr2R 19708750 57 + 21139217 CAUAUUUAGCCGUAAGUGAAAACAUUGGAAACAGGAAUAUAUAAUUAAACGCGAAUU .((((....((....((....))..((....))))...))))............... ( -6.80, z-score = -1.08, R) >droEre2.scaffold_4845 21103677 57 + 22589142 CAUAUUUAGGCGUAAGUGAAAACAUUGGAAACAGGAAUAUAUAAUUAUACGCGAAUU .........(((((.((....)).(((....))).............)))))..... ( -11.50, z-score = -3.90, R) >consensus CAUAUUUAGGCGUAAG_GAAAACAUUGGAAACAGGAAUAUAUAAUUAAACGCGAAUU .........((((...........(((....)))..............))))..... ( -5.59 = -5.79 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:46:41 2011