| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,720,594 – 19,720,687 |
| Length | 93 |
| Max. P | 0.515374 |
| Location | 19,720,594 – 19,720,687 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 80.44 |
| Shannon entropy | 0.32082 |
| G+C content | 0.43976 |
| Mean single sequence MFE | -21.57 |
| Consensus MFE | -18.00 |
| Energy contribution | -18.32 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.09 |
| Mean z-score | -0.94 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.515374 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19720594 93 - 21146708 -----AGGCUGGCAGUGGCUAAUUGCGAACUAAAUUCGUUUGCCAACUGAAAUGGGUAUUCAAAUCGAUUUAUUGAGCAGCAAACCCACAACUCCACA-- -----....((((((((((.....(((((.....)))))..))).))))...(((((.......((((....)))).......))))).....)))..-- ( -21.64, z-score = -0.55, R) >droEre2.scaffold_4845 21098054 77 - 22589142 -----AUGCUGGCAGUGGCUAAUUGCGAACUAAACUCGUUUGCGAACUGAAAUGGGUAUGCAAAUCGAUUUAUUGAGCAGCC------------------ -----..(((((((((.....)))))....((((.(((((((((.(((......))).)))))).))))))).....)))).------------------ ( -20.30, z-score = -1.17, R) >droYak2.chr2R 19703111 77 - 21139217 -----UUGCUGGCAGUGGCUAAUUGCGAGCUAAAUUCGUUUGCGAACUGAAAUGGGUAUUCAAAUCGAUUUAUUGAGCAGCC------------------ -----..((((.((((......((((((((.......))))))))....((((.(((......))).))))))))..)))).------------------ ( -18.00, z-score = -0.12, R) >droSec1.super_9 3012405 100 - 3197100 CAUUAAGGCUGGCAGUGGCUAAUUGCGAACUAAAUUCGUUUGCCAACUGAAGUGGGUAUUCAAAUCGAUUUAUCGAGCAGCAGCACCCAACUCACCCACC ......((.((((((((((.....(((((.....)))))..))).))))...(((((.......((((....))))((....)))))))......))))) ( -26.80, z-score = -1.49, R) >droSim1.chr2R 18285793 77 - 19596830 -----AGGCUGGCAGUGGCUAAUUGCGAACUAAAUUCGUUUGCCAACUGAAAUGGGUAUUCAAAUCGAUUUAUCGAGCAGCA------------------ -----..((((.(((((((.....(((((.....)))))..))).))))((((.(((......))).))))......)))).------------------ ( -21.10, z-score = -1.36, R) >consensus _____AGGCUGGCAGUGGCUAAUUGCGAACUAAAUUCGUUUGCCAACUGAAAUGGGUAUUCAAAUCGAUUUAUUGAGCAGCA__________________ .......((((.(((((((.....(((((.....)))))..))).))))((((.(((......))).))))......))))................... (-18.00 = -18.32 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:46:40 2011