| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,713,771 – 19,713,877 |
| Length | 106 |
| Max. P | 0.993570 |
| Location | 19,713,771 – 19,713,877 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 77.29 |
| Shannon entropy | 0.41157 |
| G+C content | 0.51731 |
| Mean single sequence MFE | -39.75 |
| Consensus MFE | -23.09 |
| Energy contribution | -22.96 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.82 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.63 |
| SVM RNA-class probability | 0.993570 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19713771 106 + 21146708 ----GGGCAGCGGGCGGUGCAAUAGAACGUGAAAAUCUGUUUUCCUAUAGCAUUUUCCGGGUGCGGGAAAAG-CUUGGGAA-------AGCAGGGGCAACUUCGUUGCAUCGGUACAA ----........(.(((((((((.(((.((.....((((((((((((.(((.(((((((....))))))).)-))))))))-------))))))....)))))))))))))).).... ( -43.10, z-score = -4.32, R) >droSim1.chr2R 18279146 106 + 19596830 ----GGGCAGCGGGCGGUGCAAUAGAACGUGAAAAUCUGUUUUCCUCUAGCAUUUUCCGGGUGCGGGGAAAG-CUUGGGAA-------AGCAGGGGCAACUUCGUUGCAUCGCUACAA ----........(((((((((((.(((.((.....(((((((((((..(((.((..(((....)))..)).)-)).)))))-------))))))....)))))))))))))))).... ( -46.50, z-score = -4.50, R) >droSec1.super_9 3005894 106 + 3197100 ----GGGCAGCGGGCGGUGCAAUAGAACGUGAAAAUCUGUUUUCCUCCAGCAUUUUCCGGGUGCGGGGAAAG-CUUGGGAA-------AGCAGGGGCAACUUCGUUGCAUCGGUACAA ----........(.(((((((((.(((.((.....(((((((((((..(((.((..(((....)))..)).)-)).)))))-------))))))....)))))))))))))).).... ( -41.10, z-score = -2.64, R) >droYak2.chr2R 19696048 114 + 21139217 ----GGGCAGCAGGCGAUGCAAUAGAACGUGAAAAUCUGUUUUCCUCUAGCAUUUUCCGGGGGGAGGAGAGGACAGGAGAAGCUGGGGAACAGAGGUAACUUCGUUGCAUCAAGACAA ----..((.....))((((((((.(((.((.....(((((..(((.(((((.((((((..(............).)))))))))))))))))))....)))))))))))))....... ( -36.50, z-score = -2.26, R) >droEre2.scaffold_4845 21074071 117 + 22589142 GGAGGUGGAGCAGACGAUGCAAUAGAACGUGAAAAUCUGUUUUCCUCCAGCAUUUUCCGGGGGCAGGGGCAG-CUGGAAAAGCUUGGGAACAGGGGCAACUUCGUUGCAUCGCCACAA ....((((......(((((((((.(((.((.....(((((((.((...(((.((((((((..((....))..-))))))))))).)))))))))....)))))))))))))))))).. ( -43.30, z-score = -2.26, R) >droAna3.scaffold_13266 393062 106 + 19884421 ----GGGCUAGGAGCGAUGCAAUAGAACGUGAAAAUCUGUUUUCCGCAGGCGUUUCUAUGGCUUAAACAGAAAAGUAGGGA--------ACGGUGACAACUUCGUUGCAUCGAAACAA ----......(...(((((((((.(((..((....(((((.....)))))(((((((...((((........)))).))))--------)))....))..))))))))))))...).. ( -28.00, z-score = -0.98, R) >consensus ____GGGCAGCGGGCGAUGCAAUAGAACGUGAAAAUCUGUUUUCCUCUAGCAUUUUCCGGGUGCAGGGAAAG_CUUGGGAA_______AACAGGGGCAACUUCGUUGCAUCGAUACAA ..............(((((((((.(((.((.....(((((((((((......((((((.......)))))).....))))).......))))))....))))))))))))))...... (-23.09 = -22.96 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:46:39 2011