| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,709,955 – 19,710,052 |
| Length | 97 |
| Max. P | 0.598841 |
| Location | 19,709,955 – 19,710,052 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.59 |
| Shannon entropy | 0.35793 |
| G+C content | 0.49488 |
| Mean single sequence MFE | -35.08 |
| Consensus MFE | -20.59 |
| Energy contribution | -21.07 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.598841 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19709955 97 + 21146708 UAUCCAGUGCAUUAGACUUAAAGCCACAUCCUGAUGGAUGGCGGGAUUUGGCUGUUUAUUGU----------------------GACUGGGUCACCC-CGGCGUAUACGCAAUGUGGCGU ...((((((((.(((((....(((((.((((((........)))))).)))))))))).)))----------------------.)))))(((((..-..(((....)))...))))).. ( -38.70, z-score = -2.88, R) >droAna3.scaffold_13266 389277 92 + 19884421 GAUACAGUGCAUUAGGUUUAAAGCCAACCACUGAUGGAUGGCUGGAUUUGUGUCUCUAUUGU----------------------------GUCACCCAUGACGUAUACGCAAUAUGUUGA ((((((((((((.(((((...(((((.(((....))).))))).)))))))))....)))))----------------------------)))......(((((((.....))))))).. ( -25.90, z-score = -1.24, R) >droEre2.scaffold_4845 21070277 105 + 22589142 UAUCCAGUGCCUUAGACUUAAAGCCACAUCCUGAUGGAUGGCGGGAUUUGGCUGUUUGUUGUGAC--------------ACAGUCACACAGUCCCCC-UGGCGUAUACGCAAUGUGGCGG ...((.(((.(...(((....(((((.((((((........)))))).)))))....)))..).)--------------)).(((((((((.....)-))(((....)))..)))))))) ( -36.10, z-score = -1.23, R) >droYak2.chr2R 19692070 119 + 21139217 UAUCCAGUGCAUUAGACUUAAAGCCACAUCCUGAUGGAUGGCGGGAUUUGGCUGUUUGUUGUUCGUUGUUUGUUGCUUGGCUGUGACUGUGUCACCC-UGGCGUAUACGCAAUGUGGCGG ...(((..(((.(((((....(((((.((((((........)))))).)))))))))).))).((((((.(((((((.((..(((((...)))))))-.)))).))).)))))))))... ( -37.40, z-score = -0.54, R) >droSec1.super_9 3002148 97 + 3197100 UAUCCAGUGCAUUAGACUUAAAGCCACAUCCUGAUGGAUGGCGGGAUUUGGCUGUUUGUUGU----------------------GACUGGGCCAUCC-UGGCGUAUACGCAAUGUGGCGG ...((((((((.(((((....(((((.((((((........)))))).)))))))))).)))----------------------.)))))(((((..-..(((....)))...))))).. ( -39.10, z-score = -2.90, R) >droSim1.chr2R 18275345 97 + 19596830 UAUCCAGUGCAUUAGACUUAAAGCCACAUCCUGAUGGAUGGCGGGAUUUGGCUGUUUGUUGU----------------------GACUGGGACAUCC-UGGCGUAUACGCAAUGUGGCGG ..(((((((((.(((((....(((((.((((((........)))))).)))))))))).)))----------------------.))))))((((..-..(((....))).))))..... ( -33.30, z-score = -1.61, R) >consensus UAUCCAGUGCAUUAGACUUAAAGCCACAUCCUGAUGGAUGGCGGGAUUUGGCUGUUUGUUGU______________________GACUGGGUCACCC_UGGCGUAUACGCAAUGUGGCGG ...(((.(((....(((....(((((.((((((........)))))).)))))....)))..............................(((......)))......)))...)))... (-20.59 = -21.07 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:46:38 2011