| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,704,572 – 19,704,667 |
| Length | 95 |
| Max. P | 0.702214 |
| Location | 19,704,572 – 19,704,667 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 74.47 |
| Shannon entropy | 0.42369 |
| G+C content | 0.43823 |
| Mean single sequence MFE | -24.57 |
| Consensus MFE | -11.05 |
| Energy contribution | -13.29 |
| Covariance contribution | 2.25 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.702214 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19704572 95 + 21146708 CAAGAUAAGAUAUACAUAUUUGGUGGCACAGAGCCGAGG-------AAUCUCGGUUAGCAGUAAUUCAAACCGAAGGCGGUGGGCUUAUCACCAAUUAAUGG- ...((((((...(((...((((((.((....(((((((.-------...))))))).))..........))))))....)))..)))))).(((.....)))- ( -25.90, z-score = -2.46, R) >droSim1.chr2R 18269939 103 + 19596830 CAAGAUAAGAUAUACAUAUUUGGUGGCACAGAGCCGAAAGUCGAGCAAUCUCGGCUAGCAGUAAUUCAAACCGAAGGCGGUGGGCUUAUCACCAAUUAAUGGG ...((((((...(((...(((((((((.....)))(..(((((((....)))))))..)..........))))))....)))..)))))).(((.....))). ( -31.30, z-score = -3.19, R) >droSec1.super_9 2996702 102 + 3197100 CAAGAUAAGAUAUACAUAUUUGGUGGCACAGAGCCGAAAGUCGAUGAAUCUCGGCUAGCAGUAAUUCAAACCGAAGGCGGUGGGCUUAUCACCAAUUAAUGG- ...((((((...(((...(((((((((.....)))(..((((((......))))))..)..........))))))....)))..)))))).(((.....)))- ( -27.90, z-score = -2.20, R) >droYak2.chr2R 19686684 75 + 21139217 --------------------------CA-AGAUAAGAUAUGGGUAGAAUCUCGGUUAGCAGUAAUUCAAGCCGUAAGCAGCGGGCUUAUCACAAAUUAAUGG- --------------------------..-.((((((.........((((..(........)..))))...((((.....)))).))))))............- ( -13.20, z-score = -0.53, R) >consensus CAAGAUAAGAUAUACAUAUUUGGUGGCACAGAGCCGAAAGUCGA_GAAUCUCGGCUAGCAGUAAUUCAAACCGAAGGCGGUGGGCUUAUCACCAAUUAAUGG_ ...................(((((((.....((((((.............))))))(((..........((((....))))..)))..)))))))........ (-11.05 = -13.29 + 2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:46:37 2011