| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,759,739 – 3,759,838 |
| Length | 99 |
| Max. P | 0.957951 |
| Location | 3,759,739 – 3,759,838 |
|---|---|
| Length | 99 |
| Sequences | 10 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 84.77 |
| Shannon entropy | 0.28824 |
| G+C content | 0.35371 |
| Mean single sequence MFE | -29.12 |
| Consensus MFE | -13.50 |
| Energy contribution | -13.50 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.34 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.65 |
| SVM RNA-class probability | 0.957951 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3759739 99 - 23011544 -----------UAUUUUGUUAGAUUUUAGAUCACUUUACAUACCAAACAUUUAGAUUAGCGAUUUGAU---UGGUGUGUGAUGUUG---GUGGUGUAGGAUUUGG---UGGAGCGCAAA -----------..(((..((((((((((.(((((((((((((((((....(((((((...))))))))---))))))))))....)---))))).))))))))))---..)))...... ( -31.30, z-score = -4.66, R) >droGri2.scaffold_15126 4429082 110 - 8399593 UUAAGAUUUUAAGGUUAUGGUUGUUUUUUAUCACUUUACAUACCAAACAUUUACAUUAGCGAUUUGAU---UGGUGUGUGAUGUUG---GUGGUGUAGGAUGUGG---UGGAGCGCAAA ....................((((.(((((((((.(((((((((((.((((((((((((........)---))))))).)))))))---)).))))))...))))---))))).)))). ( -28.40, z-score = -2.25, R) >droVir3.scaffold_12963 5255809 112 + 20206255 UUUAGAUUUUAAGAUUAUUCUU-UGGUUGAUCACUUUACAUACCAAACAUUUACAUUAGCGAUUUGAUUGGUGGUGUGUGAUGUUG---GUGGUGUAGGAUGUGG---UGGAGCGCAUA ..........((((....))))-.(.((.(((((.(((((((((((.(((((((((((.((((...)))).))))))).)))))))---)).))))))...))))---).)).)..... ( -29.30, z-score = -2.01, R) >droMoj3.scaffold_6500 14445098 108 + 32352404 UUUAGAUUUUAAGUUUAGUUUU-C-GUUUAUCACUUUACAUACCAAACAUUUACAUUAGCGAUUUGAU---UGGUGUGUGAUGUUG---GUGGUGUAGGAUGUGG---UGGAGCGCAAA .((((((.....))))))....-(-(((((((((.(((((((((((.((((((((((((........)---))))))).)))))))---)).))))))...))))---).))))).... ( -25.70, z-score = -1.52, R) >droWil1.scaffold_180708 3256307 99 + 12563649 -------------UUUUGU----UCAUAUAUCACUUUACAUACCAAACAUUUAUAUUAGCGAUUUGAU---UGGUGUGUGAUGUUGGUUGUGGUGUAGGAUUUGAAGUUGGAGCGCAUA -------------....((----((.((((((((.(((((((((((.((...............)).)---))))))))))........)))))))).(((.....))).))))..... ( -22.06, z-score = -0.67, R) >droAna3.scaffold_12916 5829991 99 - 16180835 ----------UAGUUUUGUUAG-UUUAAUAUCACUUUACAUACCAAACAUUUAGAUUAGCGAUUUGAU---UGGUGUGUGAUGUUG---GUGGUGUAGGAUUUGG---UGGAGCGCAAA ----------..((((..((((-((..(((((((((((((((((((....(((((((...))))))))---))))))))))....)---)))))))..)).))))---..))))..... ( -29.20, z-score = -3.68, R) >droEre2.scaffold_4929 3806368 99 - 26641161 -----------UAUUUUGUUAGAUUUUAGAUCACUUUACAUACCAAACAUUUAGAUUAGCGAUUUGAU---UGGUGUGUGAUGUUG---GUGGUGUAGGAUUUGG---UGGAGCGCAAA -----------..(((..((((((((((.(((((((((((((((((....(((((((...))))))))---))))))))))....)---))))).))))))))))---..)))...... ( -31.30, z-score = -4.66, R) >droYak2.chr2L 3761440 99 - 22324452 -----------UAUUUUGUUAGAUUUUAGAUCACUUUACAUACCAAACAUUUAGAUUAGCGAUUUGAU---UGGUGUGUGAUGUUG---GUGGUGUAGGAUUUGG---UGGAGCGCAAA -----------..(((..((((((((((.(((((((((((((((((....(((((((...))))))))---))))))))))....)---))))).))))))))))---..)))...... ( -31.30, z-score = -4.66, R) >droSec1.super_5 1854854 99 - 5866729 -----------UAUUUUGUUAGAUUUUAGAUCACUUUACAUACCAAACAUUUAGAUUAGCGAUUUGAU---UGGUGUGUGAUGUUG---GUGGUGUAGGAUUUGG---UGGAGCGCAAA -----------..(((..((((((((((.(((((((((((((((((....(((((((...))))))))---))))))))))....)---))))).))))))))))---..)))...... ( -31.30, z-score = -4.66, R) >droSim1.chr2L 3714893 99 - 22036055 -----------UAUUUUGUUAGAUUUUAGAUCACUUUACAUACCAAACAUUUAGAUUAGCGAUUUGAU---UGGUGUGUGAUGUUG---GUGGUGUAGGAUUUGG---UGGAGCGCAAA -----------..(((..((((((((((.(((((((((((((((((....(((((((...))))))))---))))))))))....)---))))).))))))))))---..)))...... ( -31.30, z-score = -4.66, R) >consensus ___________UAUUUUGUUAGAUUUUAGAUCACUUUACAUACCAAACAUUUAGAUUAGCGAUUUGAU___UGGUGUGUGAUGUUG___GUGGUGUAGGAUUUGG___UGGAGCGCAAA ................................((.((((((((((...(((..............)))...)))))))))).))........((((................))))... (-13.50 = -13.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:14:37 2011