| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,653,379 – 19,653,473 |
| Length | 94 |
| Max. P | 0.950238 |
| Location | 19,653,379 – 19,653,473 |
|---|---|
| Length | 94 |
| Sequences | 8 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 80.16 |
| Shannon entropy | 0.36054 |
| G+C content | 0.46594 |
| Mean single sequence MFE | -34.20 |
| Consensus MFE | -17.57 |
| Energy contribution | -17.60 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.72 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.56 |
| SVM RNA-class probability | 0.950238 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19653379 94 - 21146708 UGCGUGUUGGCCGUGGUUACAUAAUCUAAUGGGCCACGCUAACU------------------GCAGUCGGCAGUUAGUUCAGAUCAGAUUUUUUCGGCUGGCAUG-UUUUAUU .((((((..(((((((((.(((......)))))))))(((((((------------------((.....))))))))).................)))..)))))-)...... ( -38.20, z-score = -4.82, R) >droSim1.chr2R 18220625 94 - 19596830 UGCGUGUUGGCCGUGGUUACAUAAUCUAAUGGGCCACGCUAACU------------------GCAGUCGGCAGUUAGUUCAGAUCAGAUUUUUUCGGCUGGCAUG-UUUUAUU .((((((..(((((((((.(((......)))))))))(((((((------------------((.....))))))))).................)))..)))))-)...... ( -38.20, z-score = -4.82, R) >droSec1.super_9 2943777 94 - 3197100 UGCGUGUUGGCCGUGGUUACAUAAUCUAAUGGGCCACGCUAACU------------------GCAGUCGGCAGUUAGUUCAGAUCAGAUUUUUUCGGCUGGCAUG-UUUUAUU .((((((..(((((((((.(((......)))))))))(((((((------------------((.....))))))))).................)))..)))))-)...... ( -38.20, z-score = -4.82, R) >droYak2.chr2R 19631357 112 - 21139217 UGCGUGUUGGCCGUGGUUACAUAAUCUAAUGGGCCACGCUAACUGCAGUCGCAGUCGCCGUCGCAGUCGGCAGCUAGUUCAGAUCAGAUUUUUUCGGCUGGCAUG-UUUUAUU .((((((..(((((((((.(((......)))))))))(((.(((((....))))).((((.......))))))).....................)))..)))))-)...... ( -41.10, z-score = -2.56, R) >droEre2.scaffold_4845 21013938 94 - 22589142 UGCGUGUUGGCCGUGGUUACAUAAUCUAAUGGGCCACGCUAACU------------------GCAGUCGGCAGUUAGUUCAGAUCAGAUUUUUUCGGCUGGCAUG-UUUUAUU .((((((..(((((((((.(((......)))))))))(((((((------------------((.....))))))))).................)))..)))))-)...... ( -38.20, z-score = -4.82, R) >droAna3.scaffold_13266 332553 110 - 19884421 UGCGUGUUGGCCGUGGUUACAUAAUCUAAUGGGCCACGCUAACUGCA---GCUCUCAGCUUUUUAGCCAAAAGUUGACUCAGAUCAGAUUUUUUUGGCUUGCAUGUUUUUAUU .((((((.((((((((((.(((......))))))))).....(((.(---(...(((((((((.....)))))))))))))).............)))).))))))....... ( -32.20, z-score = -1.75, R) >dp4.chr3 19438908 102 + 19779522 UGCGUGUUGGCCGCAGUUGCAUAAUCUAAUGGGCCACGCUAACUGCAUUCG--------GCCUUAGCC-GCAGUUGACUCAGAUCAGAUUUUUCC-GUACACACAUUUUGGU- (((((((.((((((....)).....(....)))))))))(((((((....(--------((....)))-)))))))...................-))).............- ( -23.90, z-score = 0.95, R) >droPer1.super_2 8510106 102 + 9036312 UGCGUGUUGGCCGUAGUUGCAUAAUCUAAUGGGCCACGCUAACUGCAUUCG--------GCCUUAGCC-GCAGUUGACUCAGAUCAGAUUUUUCC-GUACACACAUUUUGGU- (((((((.((((.(((.........)))...))))))))(((((((....(--------((....)))-)))))))...................-))).............- ( -23.60, z-score = 0.85, R) >consensus UGCGUGUUGGCCGUGGUUACAUAAUCUAAUGGGCCACGCUAACU__________________GCAGUCGGCAGUUAGUUCAGAUCAGAUUUUUUCGGCUGGCAUG_UUUUAUU (((..((((((.((((((.(((......))))))))))))))).....................((((((.....((.((......)).))..)))))).))).......... (-17.57 = -17.60 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:46:33 2011