| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,634,778 – 19,634,847 |
| Length | 69 |
| Max. P | 0.980611 |
| Location | 19,634,778 – 19,634,847 |
|---|---|
| Length | 69 |
| Sequences | 5 |
| Columns | 86 |
| Reading direction | forward |
| Mean pairwise identity | 65.70 |
| Shannon entropy | 0.54924 |
| G+C content | 0.41913 |
| Mean single sequence MFE | -16.16 |
| Consensus MFE | -9.10 |
| Energy contribution | -9.70 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.05 |
| SVM RNA-class probability | 0.980611 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19634778 69 + 21146708 -----------------CGAGUGCUAAAGCACUGCUAGAAUGGCUGAAUAGCUAUUCAGUAGAACUCAAAACAAUACCCGAGCUGC -----------------.((((((....)).(((((.((((((((....))))))))))))).))))................... ( -21.00, z-score = -2.98, R) >droSim1.chr2R 18201147 69 + 19596830 -----------------CGAGUGCUAAGGCACUGAUAGAAUGGCUGAAUAGCUAUUCAGCAGAACUGAAAACAAUACCCGAGCUGC -----------------..(((((....)))))....((((((((....)))))))).((((..(.(..........).)..)))) ( -18.40, z-score = -2.20, R) >droSec1.super_9 2915100 69 + 3197100 -----------------CGAGUGCUAAAGCACUGAUAGAAUGGCUGAAUAGCUAUUCAGUAGAACUGAAAACAAUACCCGAGCUGC -----------------(((((((....)))))....((((((((....)))))))).....................))...... ( -16.30, z-score = -2.13, R) >droYak2.chr2R 19613090 69 + 21139217 -----------------AAAGUGUUAAAGCACUGAAAGAAUGGCUGAAUAGCUAUAGAAAAGAACACAAAACAAUAUCCGAGUUGC -----------------..(((((....)))))......((((((....))))))................((((......)))). ( -9.60, z-score = -0.83, R) >apiMel3.Group4 6240025 85 + 10796202 CGCGACACAAAACACUCCUAGAAAUAUA-UAUUCGCGAAGAAGAAAUAUAGCUAAUUCGUUGAAUACGUAACGGGACGCGAAUUCC ((((...........((((.....((..-((((((((((..((........))..)))).))))))..))..))))))))...... ( -15.50, z-score = -0.96, R) >consensus _________________CGAGUGCUAAAGCACUGAUAGAAUGGCUGAAUAGCUAUUCAGUAGAACUCAAAACAAUACCCGAGCUGC ...................(((((....)))))....((((((((....))))))))............................. ( -9.10 = -9.70 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:46:32 2011