| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,631,653 – 19,631,762 |
| Length | 109 |
| Max. P | 0.613711 |
| Location | 19,631,653 – 19,631,762 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 69.42 |
| Shannon entropy | 0.58503 |
| G+C content | 0.39282 |
| Mean single sequence MFE | -24.87 |
| Consensus MFE | -12.07 |
| Energy contribution | -13.66 |
| Covariance contribution | 1.59 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.613711 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19631653 109 + 21146708 -AAUGAGAGCAUGAAUUGAAUGCCACGGCAUUUUCAGCGCACUUUCCUUGACUUUAUUCGAUCCAGUUUUUUGAUUAAAGAGAGCUGUUUUCAAUUCAAUCAAUAUAGCA -...(((((..((....((((((....))))))....))..))))).((((....(((.((..(((((((((......)))))))))..)).)))....))))....... ( -23.40, z-score = -0.95, R) >droEre2.scaffold_4845 20994770 90 + 22589142 -AAUGAGAGCU--GAUUGAAUGCCACGGCAUUUACAGCGCACUUUCUUGAGCUUAAUUCGAUCCAGUUUUCUGAUUAAGGAGAGCUGUAACCA----------------- -..((((.(((--(..(((((((....)))))))))))((.(......).))....))))...(((((((((......)))))))))......----------------- ( -25.40, z-score = -2.06, R) >droYak2.chr2R 19609761 107 + 21139217 -AAUGAGAGCU--GCUUGAAUGCCACGGCAUUUUCAGCGCACUUUCUUGAGCUUUAUUCGAUCCAGUUUUCCGAUUAAAGAGCGCUGUUUCCAAUUCAAUCAAUAUGCCA -...(((((.(--((((((((((....))))..)))).))))))))((((.....(((.((..((((.(((........))).))))..)).)))....))))....... ( -25.00, z-score = -0.76, R) >droSec1.super_9 2911855 109 + 3197100 -AAUGAGAGCUUGAAUUGAAUGCCACGGCAUUUUCAGCGCACUUUCCUUGGCUCUAUUCGAUCCAGUUUUCUGAUUAAAGAGAGCUGUUUUCAAUUCAAUCAAUAAAGCA -.......(.((((((((((.((((.((.................)).))))...........(((((((((......)))))))))..)))))))))).)......... ( -26.43, z-score = -0.97, R) >droSim1.chr2R 18197885 109 + 19596830 -AAUGAGAGUUUGAAUUGAAUGCCACGGCAUUUUCAGCGCACUUUCCUUGGCUCUAUUCGAUUCAGUUUUCUGAUUAAAGAGAGCUGUUUUCAAUUCAAUCAAUAAAGCA -...((((((.((....((((((....))))))....)).))))))....(((.((((.(((((((((((((......)))))))))..........)))))))).))). ( -29.80, z-score = -2.25, R) >droPer1.super_4 2474622 99 - 7162766 AUAGAGGGGCAGCGAAGGAAUGC----AUAUCUUCCGAUCAUGGGUCUAGCCGCAA----ACUAUGUUUUUGAAGCGAAUAUCCCUAUAUGAAUGAUAUGCAAUAAA--- ....................(((----((((((((.....(((((..((..(((..----..............)))..))..)))))..))).)))))))).....--- ( -19.19, z-score = 0.93, R) >consensus _AAUGAGAGCUUGAAUUGAAUGCCACGGCAUUUUCAGCGCACUUUCCUUGGCUCUAUUCGAUCCAGUUUUCUGAUUAAAGAGAGCUGUUUUCAAUUCAAUCAAUAAAGCA ....(((((........((((((....))))))........))))).................(((((((((......)))))))))....................... (-12.07 = -13.66 + 1.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:46:31 2011