| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,614,081 – 19,614,196 |
| Length | 115 |
| Max. P | 0.951075 |
| Location | 19,614,081 – 19,614,196 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 58.65 |
| Shannon entropy | 0.57920 |
| G+C content | 0.46486 |
| Mean single sequence MFE | -25.77 |
| Consensus MFE | -10.89 |
| Energy contribution | -11.22 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.57 |
| SVM RNA-class probability | 0.951075 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19614081 115 - 21146708 AGACUACAAACCACCCGCUCAAAAUCACCGGAAACGGAUACACUUCAGCAUGAAUCAUGAAGGCGCAUAAAAACGAGUGAGAACGGGAUGUUUUCAGCCGCCGAAAAGCAAAACA .(.((..((((..((((((((...((.(((....))).....(((((..........)))))............)).))))..))))..))))..)).)((......))...... ( -25.50, z-score = -1.39, R) >droSec1.super_9 2894677 91 - 3197100 ------------------------AGACCGGAAACGGAUAUACUUCAGCAUGAAUCAUGAUGGCGCAUAAAAAAGGGUGAGAACAGGCUGUUUUCAGCCGCCGAAAAGCAAAACA ------------------------...(((....)))......(((.(((((..((.....))..)))......((.(((((((.....))))))).)))).))).......... ( -24.00, z-score = -1.96, R) >droEre2.scaffold_4845 20977073 89 - 22589142 ----AGACAAGAAUCCGCCCAAAAUCUCCGGAAACGGAUGCACAACAGCAUGAAU---AAAUGCGGAUUCAAAAGAGCGAGCACGGGGUGUCUUCA------------------- ----(((((.((((((((........((((....))))(((......))).....---....)))))))).......((....))...)))))...------------------- ( -27.80, z-score = -2.75, R) >consensus ________AA__A_CCGC_CAAAAUCACCGGAAACGGAUACACUUCAGCAUGAAUCAUGAAGGCGCAUAAAAAAGAGUGAGAACGGGAUGUUUUCAGCCGCCGAAAAGCAAAACA ...........................(((....)))..........((.............))..............((((((.....)))))).................... (-10.89 = -11.22 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:46:24 2011