| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,612,727 – 19,612,818 |
| Length | 91 |
| Max. P | 0.556368 |
| Location | 19,612,727 – 19,612,818 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 64.60 |
| Shannon entropy | 0.55585 |
| G+C content | 0.44387 |
| Mean single sequence MFE | -24.90 |
| Consensus MFE | -12.73 |
| Energy contribution | -13.35 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.556368 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19612727 91 - 21146708 ----------CACACUCGCCCAU-CCAUGAACGUGCCAGUAUGGGUGAUGUGUUUUUUUUUUUUGUUGCGAACUGCACUUACUGUGGGGCAUACGUAAUUAA ----------.((((((((((((-...((.......))..)))))))).))))...........((((((..((.(((.....))).))....))))))... ( -24.70, z-score = -0.96, R) >droAna3.scaffold_13266 8251145 95 - 19884421 ------CGUUUA-GUUUGCAUAUACUACGGAGCGGGUAGAGUACUUGGCAUGUUAGUGUGCUUUUUUGCAAGCAGCUCCAAUGGUGUGGCAUAUUUAAUUAA ------.(((.(-((.(((.(((((((.(((((..((((((.....(((((......))))).)))))).....)))))..)))))))))).))).)))... ( -26.30, z-score = -0.95, R) >droYak2.chr2R 19590758 89 - 21139217 CAUACACAUACACACUCGCCCAU-C--UGAACGUGCCAGUAUGGGUGAUGUG-UUU---------UCGCGAGCUGCACUUACAGUGGGGCAUACUUAAUUAA .........(((((.((((((((-(--((.......))).))))))))))))-)..---------......(((.(((.....))).)))............ ( -29.00, z-score = -2.36, R) >droSim1.chr2R 18178987 86 - 19596830 ------CACACACACUCGCCCAU-CCAUGAACGUGCCAGUAUGGGUGUUGUGUUUU---------UUACGAACUGCACUUACAGUGGGGCAUACUUAAUUAA ------...(((((..(((((((-...((.......))..))))))).)))))...---------.......((.(((.....))).))............. ( -19.60, z-score = 0.27, R) >consensus ______CAUACACACUCGCCCAU_CCAUGAACGUGCCAGUAUGGGUGAUGUGUUUU_________UUGCGAACUGCACUUACAGUGGGGCAUACUUAAUUAA ..........((((.((((((((....((.......))..))))))))))))...................(((.(((.....))).)))............ (-12.73 = -13.35 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:46:23 2011