| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,609,592 – 19,609,642 |
| Length | 50 |
| Max. P | 0.601667 |
| Location | 19,609,592 – 19,609,642 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 96.20 |
| Shannon entropy | 0.07073 |
| G+C content | 0.44400 |
| Mean single sequence MFE | -5.86 |
| Consensus MFE | -5.72 |
| Energy contribution | -5.56 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.14 |
| Mean z-score | -0.95 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.601667 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19609592 50 - 21146708 GGUUCUCCGCCGCCUUCAAUUAGCAUUCAAAUGCCAGUCAAAAUAUUCAC (((.....)))...........((((....))))................ ( -4.30, z-score = -0.44, R) >droSim1.chr2R 18175879 50 - 19596830 GGCUCUCCGCCGCCUUCAAUUAGCAUUCAAAUGCCAGUCAAAAUAUUCAC (((.....)))...........((((....))))................ ( -6.50, z-score = -1.29, R) >droSec1.super_9 2890336 50 - 3197100 GGCUCUCCUCCGCCUUCAAUUAGCAUUCAAAUGCCAGUCAAAAUAUUCAC (((........)))........((((....))))................ ( -6.00, z-score = -1.83, R) >droYak2.chr2R 19587453 50 - 21139217 GGCUCUUCGACGCCUUCAAUUAGCAUUCAAAUGCCAGUCAAAAUAUUCAC (((........)))........((((....))))................ ( -6.00, z-score = -1.04, R) >droEre2.scaffold_4845 20972657 50 - 22589142 GGCUCUGCGCCGCCUUCAAUUAGCAUUCAAAUGCCAGUCAAAAUAUUCAC (((.....)))...........((((....))))................ ( -6.50, z-score = -0.17, R) >consensus GGCUCUCCGCCGCCUUCAAUUAGCAUUCAAAUGCCAGUCAAAAUAUUCAC (((........)))........((((....))))................ ( -5.72 = -5.56 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:46:22 2011