| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,606,199 – 19,606,262 |
| Length | 63 |
| Max. P | 0.938848 |
| Location | 19,606,199 – 19,606,262 |
|---|---|
| Length | 63 |
| Sequences | 6 |
| Columns | 66 |
| Reading direction | forward |
| Mean pairwise identity | 70.20 |
| Shannon entropy | 0.59385 |
| G+C content | 0.58096 |
| Mean single sequence MFE | -18.25 |
| Consensus MFE | -5.48 |
| Energy contribution | -6.20 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.60 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.938848 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19606199 63 + 21146708 CCCCCUAGGCGACAACUCUUC---GCCGAGAAGAUUGCGCCAACAGCUGCACCUGUGGCUAUUUCC .......((((.(((.(((((---.....))))))))))))...(((..(....)..)))...... ( -21.90, z-score = -3.38, R) >droSim1.chr2R 18172488 66 + 19596830 CCCCCCAGGCGACAACUCUUCUUCGCCGAGAAGAUUGCGCCAACAGCUGCACCUGUGGCUAUUUCC .......((((.(((.(((((((....))))))))))))))...(((..(....)..)))...... ( -23.20, z-score = -3.65, R) >droSec1.super_9 2886918 66 + 3197100 CCCCCCAGGCGACAAAUCUUCUUCGCCGAGAAGAUUGCGCCAACAGCUGCACCUGUGGCUAUUUCC .......((((...(((((((((....))))))))).))))...(((..(....)..)))...... ( -24.10, z-score = -4.04, R) >droYak2.chr2R 19584059 66 + 21139217 ACUCCCGAACCACUCCCACUCCUCCCCGAGCAGAUUGCGCCAACAGCUGCACCUGUGGCUAUUUCC .........((((......((......))((((.(((......)))))))....))))........ ( -10.00, z-score = -0.44, R) >droEre2.scaffold_4845 20968351 66 + 22589142 ACUCCCCCCUCGCGACAUCUCCUGCCCGAUAAAAUUGCGCCAACAGCUGCACCUGUGGCUAUUUCC ...........((((.(((........)))....))))((((.(((......)))))))....... ( -10.90, z-score = -1.23, R) >droAna3.scaffold_13266 5611443 60 + 19884421 ---CCCUCUCGUCGAGAACCCUCGACCAAGGGUGCUUCGCCAACAGUUUGAAGCGUUCCUAUU--- ---((((...((((((....))))))..)))).((((((.........)))))).........--- ( -19.40, z-score = -2.84, R) >consensus CCCCCCAGGCGACAACUCCUCUUCGCCGAGAAGAUUGCGCCAACAGCUGCACCUGUGGCUAUUUCC .................((((........)))).....((((.(((......)))))))....... ( -5.48 = -6.20 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:46:20 2011