| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,600,883 – 19,600,999 |
| Length | 116 |
| Max. P | 0.719638 |
| Location | 19,600,883 – 19,600,999 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 70.81 |
| Shannon entropy | 0.51852 |
| G+C content | 0.56961 |
| Mean single sequence MFE | -23.09 |
| Consensus MFE | -12.39 |
| Energy contribution | -13.28 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.719638 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19600883 116 + 21146708 --UCUCACCCUUGGCAACGGCAACAAAGUAGGUGCAACAAAGAGUCAUAGCGACCGUCUCUCCUGCGCCUACAGAGCAACUCU-CCCCACCCCCAGCCCCUCAGGAAAAUGGUCAGACU --(((.((((((((....(((......(((((((((....((((.(.........).))))..)))))))))((((...))))-...........)))..))))).....))).))).. ( -29.90, z-score = -1.24, R) >droSim1.chr2R 18167086 108 + 19596830 --UCUCACCCUUGGCAACGGCAACAAAGUAGGUGCAACAAAGAGUCAUAGCGACCGUCUCUCCUGCGCCUACAGAGCCACUAC-CCCCGCCCCCAGCCUACUAGUUCGACU-------- --..........(((...(....)...(((((((((....((((.(.........).))))..)))))))))...)))((((.-....((.....))....))))......-------- ( -25.90, z-score = -1.01, R) >droSec1.super_9 2879949 107 + 3197100 --UCUCACCCUUGGCAACGGCAACAAAGUAGGUGCAACAAAGAGUCAUAGCGACCGUCUCUCCUGCGCCUACAGAGCCACU-C-CCCCGCCCCCAGCCUACUAGUUCGACU-------- --..........(((...(((......(((((((((....((((.(.........).))))..))))))))).(((...))-)-....)))....))).............-------- ( -27.30, z-score = -1.57, R) >droYak2.chr2R 19578095 98 + 21139217 --UCUAACCCUUGGCAACGACAACAAAGUAGGUGCAACAAAGAGUCAUAGCGACCGUCUCUCAUGCGCCUACCCCCCGGUUCC-CCUGCCCCACA-CCGACU----------------- --..........((((..(((......(((((((((....((((.(.........).))))..)))))))))......)))..-..)))).....-......----------------- ( -23.40, z-score = -1.90, R) >droEre2.scaffold_4845 20962872 99 + 22589142 --UCCUACCCUUGACAACGACAACAAAGUAGGUGCAACAAAGAGCCAUAGCGACCGUCUCUCAUGCGCCUACCCCCCGGCCCC-CGCCCCCACUAGCCGACU----------------- --.........................(((((((((....((((.(.........).))))..)))))))))....((((...-...........))))...----------------- ( -20.84, z-score = -1.82, R) >droAna3.scaffold_13266 8239218 95 + 19884421 AGUGUAACCCUGAGCAACAGCUACAACGCAG---CAAUAAAUUGUCAGAGUG----UUUCUCAUGAGCCUAUUGACCCCCCCCACAGCCCCACCAACCACCC----------------- .(((.....((((((....))).........---.........(((((((.(----(((.....)))))).)))))........)))...))).........----------------- ( -11.20, z-score = 0.09, R) >consensus __UCUCACCCUUGGCAACGGCAACAAAGUAGGUGCAACAAAGAGUCAUAGCGACCGUCUCUCAUGCGCCUACAGACCCACUCC_CCCCCCCCCCAGCCGACU_________________ ...........................(((((((((....((((.(.........).))))..)))))))))............................................... (-12.39 = -13.28 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:46:18 2011