| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,545,863 – 19,545,958 |
| Length | 95 |
| Max. P | 0.734074 |
| Location | 19,545,863 – 19,545,958 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 81.28 |
| Shannon entropy | 0.33615 |
| G+C content | 0.58102 |
| Mean single sequence MFE | -30.38 |
| Consensus MFE | -20.04 |
| Energy contribution | -20.66 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.734074 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19545863 95 - 21146708 GCCGAGCCCCCGGCAAGUGCUUACACUCC------------AGAUGGAGUCUGCACGCAACCAGAAUCCAGCUUUAUAGAGAUUGAGCCCCCGGCAAAGGCACACCA (((..(((...(((..((((....(((((------------....)))))..))))............((((((....))).))).)))...)))...)))...... ( -29.90, z-score = -2.43, R) >droSim1.chr2R 18117695 95 - 19596830 GCCGAGCCCCCGGCAAGUGCUUUCACUCC------------AGAUGGAGUCUGCACGCAACCAGAAUCCAGCUUUAUAGAGAUUGAGCCCCCGGCAAAGGCACACCA (((..(((...(((..((((....(((((------------....)))))..))))............((((((....))).))).)))...)))...)))...... ( -29.90, z-score = -2.16, R) >droSec1.super_9 2825341 95 - 3197100 GCCGAGCCCCCGGCAAGUGCUUACACUCC------------AGAUGGAGUCUGCACGCAACCAGAAUCCAGCUUUAUAGAGAUUGAGCCCCCGGCAAAGGCACACCA (((..(((...(((..((((....(((((------------....)))))..))))............((((((....))).))).)))...)))...)))...... ( -29.90, z-score = -2.43, R) >droYak2.chr2R 19522018 107 - 21139217 GCUUGGCCCCCGGCUAGUGCUCACACUCCAGAUGGAGAUGGAGAUGGAGUCUGCACGCAGCCAGAAUCCAGCUUUAUAGAGAUUGAGCCCCCGGCAAAGGCACACCA ((((.(((...((((....(((...((((....))))((((((.((((.(((((.....).)))).)))).)))))).)))....))))...)))..))))...... ( -39.10, z-score = -1.73, R) >droEre2.scaffold_4845 20908102 94 - 22589142 GCUGAGCCCCCGGCAAGUGCU-ACACUCC------------AGAUGGAGUCUGCACGCAGCCAGAAUCCAGCUUUGUAGGGACUGAGCCCCCGGCAGAGGCACACCA ((((.(((...)))..((((.-..(((((------------....)))))..)))).))))..........((((((.(((........))).))))))........ ( -33.00, z-score = -0.48, R) >droAna3.scaffold_13266 8178140 83 - 19884421 GCCGAGCCCCAGGCAAUUGCUUACACUCC------------AGAUGGAGUCUGCACGC------AAUCCAGCUUCAUUUGGCCUCCAGUACCCUCACAAAU------ (((........)))...((((......((------------((((((((.(((.....------....))))))))))))).....))))...........------ ( -20.50, z-score = -1.18, R) >consensus GCCGAGCCCCCGGCAAGUGCUUACACUCC____________AGAUGGAGUCUGCACGCAACCAGAAUCCAGCUUUAUAGAGAUUGAGCCCCCGGCAAAGGCACACCA (((..(((...(((..((((....(((((................)))))..))))............((((((....))).))).)))...)))...)))...... (-20.04 = -20.66 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:46:10 2011