| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,521,900 – 19,522,013 |
| Length | 113 |
| Max. P | 0.801492 |
| Location | 19,521,900 – 19,522,013 |
|---|---|
| Length | 113 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.49 |
| Shannon entropy | 0.18286 |
| G+C content | 0.29902 |
| Mean single sequence MFE | -18.44 |
| Consensus MFE | -16.33 |
| Energy contribution | -16.16 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.801492 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19521900 113 + 21146708 AGAUCGUUCACAAUUUCCACC-------GAUUGAAAGAGAUCUUUCAAUCCAAGCUCUUUGAUGGCGUUCAUAUGUAAAUAGAUUGUUCAAAUAUUUGCAUUAUUUGUUAGUACCUUAAA .((.(((.(((((........-------(((((((((....)))))))))........))).))))).))..(((((((((...........)))))))))................... ( -20.89, z-score = -1.21, R) >droSim1.chr2R 18092482 112 + 19596830 -GAUCGUUCACAAUUUCCACC-------GAUUGAAAGAGAUCUUUCAAUCCGAGCUCUUUGAUGGCGUUCAUAUGUAAAUAAAUUGUUCAAAUAUUUGCAUUAUUUGUUAGUACCUUAAA -........(((((((.....-------(((((((((....))))))))).((((.((.....)).))))..........))))))).((((((.......))))))............. ( -20.60, z-score = -1.25, R) >droSec1.super_9 2801559 112 + 3197100 -GAUCGUUCACAAUUUCCACC-------GAUUGAAAGAGAUCUUUCAAUCCAAGCUCUUUGAUGGCGUUCAUAUGUAAAUAAAUUGUUCAAAUAUUUGCAUUAUUUGUUAGUACCUUAAA -((.(((.(((((........-------(((((((((....)))))))))........))).))))).))..(((((((((...........)))))))))................... ( -19.89, z-score = -1.34, R) >droYak2.chr2R 19497672 113 + 21139217 CGAUCGUUCACAAUUUCCACC-------GAUUGAAAGAGAUCUUUCAAUCCAAGCUCUUUGAUGGCGUUCAUAUGUAAAUAAAUUGUUCAAAUAUUUGCAUUAUUUGUUAGUACCUUAAA .((.(((.(((((........-------(((((((((....)))))))))........))).))))).))..(((((((((...........)))))))))................... ( -20.19, z-score = -1.28, R) >droEre2.scaffold_4845 20884586 113 + 22589142 CGAUCGUUCACAAUUUCCACC-------GAUUGAAAGAGAUCUUUCAAUCCAAGCUCUUUGAUGGCGUUCAUAUGUAAAUAAAUUGUUCAAAUAUUUGCAUUAUUUGUUAGUACCUUAAA .((.(((.(((((........-------(((((((((....)))))))))........))).))))).))..(((((((((...........)))))))))................... ( -20.19, z-score = -1.28, R) >droAna3.scaffold_13266 8154131 113 + 19884421 AUCUCGUUCACAAUUUCCAUC-------GAUUGAAAGAUCUCUUUCAAUUCAAGCUCUUUGAUGGCGUUCAUAUGUAAAUAAAUUGUUCAAAUAUUUGCAUUAUUUGUUAGUACCUUAAA .........((((...(((((-------(((((((((....)))))))))..........))))).......(((((((((...........)))))))))...))))............ ( -17.40, z-score = -1.21, R) >dp4.chr3 10297792 120 - 19779522 AUCUCGUUCACAAUUUCCAUCUACCAUCAAUUGAAAGAUCUCUUUCAAUCCAAGCUCUUUGAUGGCGUUCAUAUGUAAAUAAAUUGUUCAAAUAUUUGCAUUAUUUGUUAGUACCUUAAA .........((((..........((((((((((((((....))))))))..........)))))).......(((((((((...........)))))))))...))))............ ( -18.10, z-score = -1.95, R) >droPer1.super_4 2357717 120 - 7162766 AUCUCGUUCACAAUUUCCAUCUACCAUCAAUUGAAAGAUCUCUUUCAAUCCAAGCUCUUUGAUGGCGUUCAUAUGUAAAUAAAUUGUUCAAAUAUUUGCAUUAUUUGUUAGUACCUUAAA .........((((..........((((((((((((((....))))))))..........)))))).......(((((((((...........)))))))))...))))............ ( -18.10, z-score = -1.95, R) >droWil1.scaffold_181141 2760534 111 - 5303230 AACUCGUUCACA--UUUCAUC-------AAUUGAAAGAUCUCUUUCAAUUCAGCUUCUUUGAUGGCGUUCAUAUGUAAAUAAAUUGUUCAAAUAUUUGCAUUAUUUGUUAGUACCUUAAA ............--...((((-------(((((((((....))))))))..........)))))((...((.(((((((((...........)))))))))....))...))........ ( -16.40, z-score = -1.19, R) >droVir3.scaffold_12875 2124878 110 - 20611582 AUCUCGUUCACC--UUUCAUC-------AAUUGAAAGAUCUCUUUCAAUUCAACU-CUUUGAUGGCGUUCAUAUGUAAAUAAAAUGUUUAAAUAUUUGCAUUAUUUGUUAGUACCUUAAA ............--...((((-------(((((((((....))))))))......-...)))))((...((.(((((((((...........)))))))))....))...))........ ( -16.50, z-score = -1.89, R) >droMoj3.scaffold_6496 14727859 110 - 26866924 AUCUCGUUCACC--UUUCAUC-------AAUUGAAAGAUCUCUUUCAAUUCAACU-CUUUGAUGGCGUUCAUAUGUAAAUAAAAUGUUUAAAUAUUUGCAUUAUUUGUUAGUACCUUAAA ............--...((((-------(((((((((....))))))))......-...)))))((...((.(((((((((...........)))))))))....))...))........ ( -16.50, z-score = -1.89, R) >droGri2.scaffold_15245 13723210 110 - 18325388 AUCUCGUUCACC--UUUCAUC-------AAUUGAAAGAUCUCUUUCAAUUCAACU-CUUUGAUGGCGUUCAUAUGUAAAUAAAAUGUUCAAAUAUUUGCAUUAUUUGUUAGUACCUUAAA ............--...((((-------(((((((((....))))))))......-...)))))((...((.(((((((((...........)))))))))....))...))........ ( -16.50, z-score = -1.88, R) >consensus AUCUCGUUCACAAUUUCCAUC_______AAUUGAAAGAUCUCUUUCAAUCCAAGCUCUUUGAUGGCGUUCAUAUGUAAAUAAAUUGUUCAAAUAUUUGCAUUAUUUGUUAGUACCUUAAA ............................(((((((((....)))))))))............(((((.....(((((((((...........)))))))))....))))).......... (-16.33 = -16.16 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:46:08 2011