| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,484,782 – 19,484,875 |
| Length | 93 |
| Max. P | 0.828726 |
| Location | 19,484,782 – 19,484,875 |
|---|---|
| Length | 93 |
| Sequences | 12 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 70.20 |
| Shannon entropy | 0.63929 |
| G+C content | 0.45733 |
| Mean single sequence MFE | -23.01 |
| Consensus MFE | -14.93 |
| Energy contribution | -15.11 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.20 |
| Mean z-score | -0.45 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.828726 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19484782 93 - 21146708 --------CCAUUAAAUAUAUGUAUUUUAU------AAAGACUUACCCUUCAUGCGACGCCACUGUUCCUUCAGGCGAUUGCAGGUGCGAUCGGUGCCAAACUGAUU --------......................------.......((((.....(((((((((..((......)))))).))))))))).(((((((.....))))))) ( -18.90, z-score = -0.35, R) >droSim1.chr2R 18055805 92 - 19596830 --------CCAUUUAAC-UAUGUAUUUUAU------AAAGACUUACCCUUCAUGCGACGCCACUGUUCCUUCAGGCGAUUGCAGGUGCGAUCGGUGCCAAACUGAUU --------.........-............------.......((((.....(((((((((..((......)))))).))))))))).(((((((.....))))))) ( -18.90, z-score = -0.41, R) >droSec1.super_9 2765793 93 - 3197100 --------CCAUUGAACAUAUGUAUUUUAC------AAAGACUUACCCUUCAUGCGACGCCACUGUUCCUUCAGGCGAUUGCAGGUGCGAUCGGUGCCAAACUGAUU --------......................------.......((((.....(((((((((..((......)))))).))))))))).(((((((.....))))))) ( -18.90, z-score = 0.05, R) >droYak2.chr2R 19459750 99 - 21139217 --------UCAUGAAGUAGUUAGUUUGAAUAAAAAGAAAGACUUACCCUUCAUGCGACGCCACUGUUCCUUCAGGCGAUUGCAGGUGCGAUCGGUGCCAAACUGAUU --------.(((((((..((.(((((............))))).)).))))))).(.((((.(((......)))..((((((....)))))))))).)......... ( -26.10, z-score = -1.38, R) >droEre2.scaffold_4845 20844998 91 - 22589142 --------CCAUAAAAUCGUUAUUCUAUAU--------GGACUUACCCUUCAUGCGACGCCACUGUUCCUUCAGGCGAUUGCAGGUGCGAUCGGUGCCAAACUGAUU --------(((((..............)))--------))...((((.....(((((((((..((......)))))).))))))))).(((((((.....))))))) ( -21.24, z-score = -0.61, R) >droAna3.scaffold_13266 8112513 91 - 19884421 ----------------UCUUUGAACUCAUUUAUAAUCAACACCCACCUUUCAUGCGCCGCCAUUGUUCCUUGAGGCGAUUACAAGUGCGAUCGGUGCCGAAUUGAUU ----------------.................((((((.........(((..((((((((............)))(((..(....)..)))))))).))))))))) ( -16.50, z-score = 0.11, R) >dp4.chr3 10260003 105 + 19779522 ACAUUAAUUUAUUAGAUGAAAGGCAUCUUUCUGA--UGGCACAUACCCUUCAUGCGGCGCCACUGCUCCUUGAGGCGAUUGCAGGUGCGAUCGGUGCCAAAUUGAUU ..((((((((((((((.((......))..)))))--)(((((.....(((((.((((.....))))....)))))(((((((....)))))))))))))))))))). ( -33.80, z-score = -1.95, R) >droPer1.super_4 2319889 105 + 7162766 ACAUUAAUUUAUUAGAUGAAAGGCAUCUUUCUGA--UGGCACAUACCCUUCAUGCGGCGCCACUGCUCCUUGAGGCGAUUGCAGGUGCGAUCGGUGCCAAAUUGAUU ..((((((((((((((.((......))..)))))--)(((((.....(((((.((((.....))))....)))))(((((((....)))))))))))))))))))). ( -33.80, z-score = -1.95, R) >droWil1.scaffold_181141 4265666 90 - 5303230 ---------------GCAUAGAAAUUUAUUCGUCUUGAACAC--ACCUUUCAUACGUCGCCAUUGCUCCUUGAGGCGAUUACAAGUGCGAUCUGUGCCAAAUUGGUU ---------------(((((((........(((..((((...--....)))).)))(((((((((((......)))))).....).))))))))))).......... ( -19.00, z-score = -0.48, R) >droVir3.scaffold_12875 18398465 90 - 20611582 ----------------AAUAUCAGCUAGAAGUUUAUUA-UGCUCACCCUUCAUGCGACGCCAUUGCUCCUUGAGGCGAUUGCAGGUGCGAUCGGUGCCAAAUUGAUU ----------------...((((((..((((.......-........))))..))(.((((...(((......)))((((((....)))))))))).)....)))). ( -20.66, z-score = 0.54, R) >droMoj3.scaffold_6496 12049116 94 - 26866924 ------------AGUCGCGAUUAAUCGG-AAUUAGUUCAGGCUCACCUUUCAUGCGACGCCAUUGCUCCUUGAGGCGAUUGCAGGUGCGAUCGGUGCCAAAUUGAUU ------------.((((((((((((...-.))))))).(((....))).....)))))((.((((((......)))))).)).((..(.....)..))......... ( -25.80, z-score = 0.32, R) >droGri2.scaffold_15245 4511861 98 - 18325388 ---------ACAUUUAGAUAUCAUCUAGUUGCUAAGUGCUACACACCUUUCAUGCGGCGCCAUUGCUCUUUGAGGCGAUUGCAGGUGCGAUCUGUGCCAAAUUGAUU ---------.....(((((..(((((.(((((.(((((.....)).)))....)))))((.((((((......)))))).)))))))..)))))............. ( -22.50, z-score = 0.73, R) >consensus _________CAUUAAAUAUAUGAAUUUUAU__UA__UAAGACUUACCCUUCAUGCGACGCCACUGCUCCUUGAGGCGAUUGCAGGUGCGAUCGGUGCCAAAUUGAUU ...........................................((((.....(((((((((............)))).))))))))).(((((((.....))))))) (-14.93 = -15.11 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:46:03 2011