| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,475,942 – 19,476,009 |
| Length | 67 |
| Max. P | 0.909227 |
| Location | 19,475,942 – 19,476,009 |
|---|---|
| Length | 67 |
| Sequences | 6 |
| Columns | 75 |
| Reading direction | reverse |
| Mean pairwise identity | 68.48 |
| Shannon entropy | 0.60832 |
| G+C content | 0.53369 |
| Mean single sequence MFE | -9.77 |
| Consensus MFE | -6.45 |
| Energy contribution | -6.95 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.76 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.909227 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19475942 67 - 21146708 ----GCCUGCCC--GCCCU--CCGCCCUCCGCACUCCCCUCGAUUAUUAUGCGCAAGUGUGACGCAUGAAUCAUA ----........--.....--..((.....)).........(((..(((((((((....)).))))))))))... ( -10.10, z-score = -0.23, R) >droSim1.chr2R 18047095 52 - 19596830 -----------------------GCCCUCCGCACUCCCCUCGAUUAUUAUGCGCAAGUGUGACGCAUGAAUCAUA -----------------------((.....)).........(((..(((((((((....)).))))))))))... ( -9.80, z-score = -1.29, R) >droSec1.super_9 2757032 69 - 3197100 GCCUGCCUCCCACCGCCCC--CU-CCCUCCGCAC-UCUCUCGAUA--UAUGCGCAAGUGUGACGCAUGAAUCAUA ...................--..-..........-......(((.--((((((((....)).)))))).)))... ( -10.20, z-score = -0.75, R) >droEre2.scaffold_4845 20836189 70 - 22589142 --GCCCCUGCCCCUGCCCC--CUGCCCUCCUC-CAUCUCUCAAUUAUUAUGCGCAAGUGUGACGCAUGAAUCAUA --.................--...........-.............(((((((((....)).)))))))...... ( -8.30, z-score = -0.63, R) >droAna3.scaffold_13266 8103413 75 - 19884421 AUCCACCUCCCUCUUGCGAGGUCUCUCGCUCCACAUCUCUCAAUUAUUAUGCGCAAGUGUGACGCAUGAAUCAUA ...............(((((....))))).................(((((((((....)).)))))))...... ( -15.40, z-score = -1.69, R) >dp4.chr3 10249649 66 + 19779522 -------UCCACCCCUCCA--UAGCCCCUCCUAUAUCUCUCAAUUAUAAAGCGCAAGUGUGACGCAUGAUUCAUA -------..(((......(--(((......))))................((....))))).............. ( -4.80, z-score = 0.01, R) >consensus _____CCUCCCCC_GCCCA__CCGCCCUCCGCACAUCUCUCAAUUAUUAUGCGCAAGUGUGACGCAUGAAUCAUA ..............................................(((((((((....)).)))))))...... ( -6.45 = -6.95 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:46:02 2011