| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,466,044 – 19,466,119 |
| Length | 75 |
| Max. P | 0.987349 |
| Location | 19,466,044 – 19,466,119 |
|---|---|
| Length | 75 |
| Sequences | 5 |
| Columns | 76 |
| Reading direction | reverse |
| Mean pairwise identity | 64.52 |
| Shannon entropy | 0.60858 |
| G+C content | 0.35575 |
| Mean single sequence MFE | -13.22 |
| Consensus MFE | -6.06 |
| Energy contribution | -7.02 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.27 |
| SVM RNA-class probability | 0.987349 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19466044 75 - 21146708 AAUAUAUAUAUCAAUCCUAGUAGUUUAGGGUGGUAAGUGAACUUGCUA-UUCGGUGUCGGCCGACAUUAAAAACCG .............(((((((....)))))))((((((....)))))).-((..(((((....)))))..))..... ( -19.50, z-score = -2.12, R) >droSim1.chr2R 18037229 65 - 19596830 AAUAUAUAUAUUAAUCCUAGU----------AGUAAGUGAACUUGCUA-UUCGGUGUCGCCCGAAAUUAAAAACCG ..........(((((.....(----------((((((....)))))))-(((((......))))))))))...... ( -13.30, z-score = -2.87, R) >droSec1.super_9 2747228 69 - 3197100 AAUAUAUAUAUUAAUCCUAGUAGU------AAGUAAGUGAACUUGCUA-UUCGGUGUCGGCCGAAAUUAAAAACCG ..........(((((.....((((------((((......))))))))-((((((....)))))))))))...... ( -14.40, z-score = -2.25, R) >droYak2.chr2R 19440359 58 - 21139217 ----AAUAUAUCUAUAU--------------AGUAAGUGAACUUGCUAGUUCGGUGUCGCCCGAAAUUAAAAACCG ----............(--------------((((((....))))))).(((((......)))))........... ( -13.40, z-score = -3.12, R) >dp4.chr3 10238444 67 + 19779522 GUUCCACAUAUCCAUACAACCA-------UUUCAAGGCUAUCAAAAUA-GUCGGUUUUUCUUUCGAUUCUGAAUC- ......................-------.((((.((((((....)))-)))((........)).....))))..- ( -5.50, z-score = -0.04, R) >consensus AAUAUAUAUAUCAAUCCUAGUA_________AGUAAGUGAACUUGCUA_UUCGGUGUCGCCCGAAAUUAAAAACCG ...............................((((((....))))))...((((......))))............ ( -6.06 = -7.02 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:46:00 2011