| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,752,324 – 3,752,437 |
| Length | 113 |
| Max. P | 0.975257 |
| Location | 3,752,324 – 3,752,437 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 77.79 |
| Shannon entropy | 0.40043 |
| G+C content | 0.39789 |
| Mean single sequence MFE | -24.49 |
| Consensus MFE | -18.74 |
| Energy contribution | -18.90 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.93 |
| SVM RNA-class probability | 0.975257 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3752324 113 + 23011544 AACACCCCAAAUGAGGUCUAUUAGUAUGCUUUACACAAAGGUUGUCGUAUCUCCCAGGGAGUUCCGGGCUCAGAAUAUUUCGAAGCAUACACGUAGACCCCCUUA-CAAAUUGC-- ..............(((((((..((((((((((((((.....))).)).((((((.((.....)))))...))).......)))))))))..)))))))......-........-- ( -26.80, z-score = -0.96, R) >droSim1.chr2L 3707549 109 + 22036055 AACA----AAAUGAUGUCUAUUAGUAUGCUUUACAGAAAGGUUGUCGUAUCUCCCAGGGAGUUUCGAGCUCAAAAUAUUACGAAGCAUACUCUUAGACCCCCUUA-CAAAUCGC-- ....----.......(((((..((((((((((.........((((((...((((...))))...)))...)))........))))))))))..))))).......-........-- ( -25.63, z-score = -2.22, R) >droSec1.super_5 1847657 112 + 5866729 AACACCCAAAAUGAUGUCUAUUAGUAUGCUUUACAGAAAGGUUGUCGUAUCUCCCAGGGAGUUCCGAGCUCAAAAUAUUACGAAGCAUAC-UUUAGACCCACUUA-CAAAUUGC-- ...............(((((..((((((((((.........((((((...((((...))))...)))...)))........)))))))))-).))))).......-........-- ( -23.63, z-score = -1.58, R) >droYak2.chr2L 3753827 92 + 22324452 AACACCUAAAAUGAUGUCUUUAAGUAUGCUUUACAGAA-GGUUGUAGUAUCUCCCA----------------------UACGAAGCAUACUUUUAGACUCCUUUA-CAAACUGUUU ........(((.((.((((..(((((((((((((((..-..)))).((((.....)----------------------))))))))))))))..)))))).))).-.......... ( -21.80, z-score = -3.16, R) >droEre2.scaffold_4929 3798183 116 + 26641161 AGCACCUAAAACGAUGUCUAUAAGUAUGCUUUACCGAAAGGUUGUCGUGUCUCCCAGAGAGUUCCGCACUCAAAAUAUUACAAGGCAUACGCUUAGAACCCUUCAACAAACUGUUU ............((..((((...((((((((((((....)))....(((((((.....)))....))))............)))))))))...)))).....))............ ( -24.60, z-score = -1.53, R) >consensus AACACCCAAAAUGAUGUCUAUUAGUAUGCUUUACAGAAAGGUUGUCGUAUCUCCCAGGGAGUUCCGAGCUCAAAAUAUUACGAAGCAUACUCUUAGACCCCCUUA_CAAAUUGC__ ...............(((((...(((((((((.......((..(......)..))...((((.....))))..........)))))))))...))))).................. (-18.74 = -18.90 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:14:34 2011