| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,435,473 – 19,435,523 |
| Length | 50 |
| Max. P | 0.741101 |
| Location | 19,435,473 – 19,435,523 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 96.00 |
| Shannon entropy | 0.05510 |
| G+C content | 0.60667 |
| Mean single sequence MFE | -19.53 |
| Consensus MFE | -17.22 |
| Energy contribution | -17.33 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.741101 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19435473 50 - 21146708 CCCACCGCUGACGAUAGGUAGGUACUGUGUGUGCGGACUAUCGAGGCUGG ....(((((..((((((....((((.....))))...)))))).))).)) ( -15.90, z-score = -0.68, R) >droSim1.chr2R_random 2853821 50 - 2996586 CCCACCGCCGUCGAUAGUUAGGUACUGUGUGUGCGGACUAUCGAGGCUGG ....(((((.(((((((((..((((.....)))).)))))))))))).)) ( -23.10, z-score = -3.38, R) >droSec1.super_9 2716415 50 - 3197100 CCCACCGCCGUCGAUAGGUAGGUACUGUGUGUGCGGACUAUCGAGGCUGG ....(((((.(((((((....((((.....))))...)))))))))).)) ( -19.60, z-score = -1.58, R) >consensus CCCACCGCCGUCGAUAGGUAGGUACUGUGUGUGCGGACUAUCGAGGCUGG ....(((((.(((((((....((((.....))))...)))))))))).)) (-17.22 = -17.33 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:45:56 2011