| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,428,447 – 19,428,543 |
| Length | 96 |
| Max. P | 0.590184 |
| Location | 19,428,447 – 19,428,543 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 77.04 |
| Shannon entropy | 0.29653 |
| G+C content | 0.50908 |
| Mean single sequence MFE | -28.47 |
| Consensus MFE | -21.02 |
| Energy contribution | -19.47 |
| Covariance contribution | -1.55 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.590184 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19428447 96 - 21146708 ACCAUUAACCUUCUGGAGAUGGUCGGAUUUAUCAAAAAUUUGGAUUGUCAGCGAAACCAAUCGCUAGUUUGGUAUGGAGCUGGAAGGUCAUGGGGA .((((..((((((..(.((..(((((((((.....)))))).)))..))(((((......)))))..............)..)))))).))))... ( -29.60, z-score = -1.94, R) >droSec1.super_9 2709513 78 - 3197100 ACCAUUUACCUUCUGGAGAUGGCCGGA-------------UGGGUCG-----GAAACCCAUCGCUACACGGGUAUGAAGUUGGGAGGUCAUGGGGA .((((..((((((..(..(((.(((((-------------(((((..-----...)))))))......))).)))....)..)))))).))))... ( -28.60, z-score = -1.27, R) >droSim1.chr2R 17999929 78 - 19596830 ACCAUUUACCUUCUGGAGAUGGCCGGA-------------UGGGUCG-----GAAACCCAUCGCUACACGGGUAUGAAGUAGGAAGGUCAUGGGGA .((((..(((((((....(((.(((((-------------(((((..-----...)))))))......))).)))......))))))).))))... ( -27.20, z-score = -1.17, R) >consensus ACCAUUUACCUUCUGGAGAUGGCCGGA_____________UGGGUCG_____GAAACCCAUCGCUACACGGGUAUGAAGUUGGAAGGUCAUGGGGA .((((..((((((..(....((((..................)))).........((((..........))))......)..)))))).))))... (-21.02 = -19.47 + -1.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:45:55 2011