| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,404,541 – 19,404,630 |
| Length | 89 |
| Max. P | 0.825065 |
| Location | 19,404,541 – 19,404,630 |
|---|---|
| Length | 89 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 77.05 |
| Shannon entropy | 0.41470 |
| G+C content | 0.40471 |
| Mean single sequence MFE | -16.14 |
| Consensus MFE | -8.82 |
| Energy contribution | -9.80 |
| Covariance contribution | 0.98 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.825065 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19404541 89 + 21146708 UUUGGCAAACACCCCUUCUUCUUCUUCUUCGGCAU-GUACUUAAAACAUAAUGCCAAAUCGA--AACGGAAUUUAAUUUGCCGCACUUACCG ...((((((......((((..(((......(((((-..............))))).....))--)..)))).....)))))).......... ( -15.24, z-score = -2.24, R) >droSim1.chr2R 17985735 83 + 19596830 UGUGGCAAACACCCCUUCUCCUUC------GGCAU-GUACUUAAAACAUAAUGCCAAAUCGA--AACGGAAUUUAAUUUGCCGCACUUAACG (((((((((......((((..(((------(((((-..............))))).....))--)..)))).....)))))))))....... ( -18.64, z-score = -3.01, R) >droSec1.super_9 2693124 83 + 3197100 UGUGGCAAACGCCCCUUCUUCUUC------GGCAU-GUACUUAAAACAUAAUGCCAAAUCGA--AACGGAAUUUAAUUUGCCGCACUUAACG (((((((((......((((..(((------(((((-..............))))).....))--)..)))).....)))))))))....... ( -18.64, z-score = -2.39, R) >droYak2.chr2R 19372792 81 + 21139217 UGUGGCAAACACCCUUU--UCUUC------GGUAU-GUACUUAAAACAUAAUGCCAAAUCGA--AACGGAAUUUCAUUUGCCGCACUUACCG (((((((((........--.....------(((((-..............))))).....((--((.....)))).)))))))))....... ( -17.44, z-score = -2.38, R) >droEre2.scaffold_4845 20771116 80 + 22589142 UGCGGCUAACACCCUUU---GUUC------GGUAU-GUACUUAAAACAUAAUGCCAAAUCGA--AACGGAAUUUCAUUUGCCACACUUACCG ((.(((...........---....------(((((-..............))))).....((--((.....))))....))).))....... ( -10.94, z-score = 0.21, R) >droMoj3.scaffold_6496 12374662 86 + 26866924 UAUGGCAAUUUGUUUCUC-UAUUCGG----GUCAUUACAAUUGGCAAAUAAAUGAAUAUCACCUGACCGAAAUCAAUUUACCA-ACUUGCCG ...(((((.(((......-..(((((----((((.......)))).......((.....)).....)))))..........))-).))))). ( -15.97, z-score = -1.52, R) >consensus UGUGGCAAACACCCCUUC_UCUUC______GGCAU_GUACUUAAAACAUAAUGCCAAAUCGA__AACGGAAUUUAAUUUGCCGCACUUACCG (((((((((.....................(((((.((.........)).)))))...((........))......)))))))))....... ( -8.82 = -9.80 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:45:53 2011