| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,401,667 – 19,401,759 |
| Length | 92 |
| Max. P | 0.563789 |
| Location | 19,401,667 – 19,401,759 |
|---|---|
| Length | 92 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 75.99 |
| Shannon entropy | 0.43699 |
| G+C content | 0.44331 |
| Mean single sequence MFE | -21.46 |
| Consensus MFE | -10.80 |
| Energy contribution | -10.55 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.563789 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19401667 92 + 21146708 --------GGGGGCUGUGGAGC-GAAAGUUGAACAGCUAACUUACUUCGAUAAACAGGCUUAAUUAGCGACCAAAGCUGAAAGCCAACAAACUGCCAACUG----------------- --------.((((((((..(((-....)))..))))))..................(((((..(((((.......)))))))))).........)).....----------------- ( -27.90, z-score = -2.73, R) >droSim1.chr2R 17982811 92 + 19596830 --------GGGGGCUGUGGAGC-GAAAGUUGAACAGCUAACUUACUUCGAUAAACAGGCUUAAUUAGCGACCAAAGCUGAAAGCCAACAAACUGCCAACUG----------------- --------.((((((((..(((-....)))..))))))..................(((((..(((((.......)))))))))).........)).....----------------- ( -27.90, z-score = -2.73, R) >droSec1.super_9 2690184 92 + 3197100 --------GGGGGCUAUGGAGC-GAAAGUUGAACAGCUAACUUACUUCGAUAAACAGGCUUAAUUAGCGACCAAAGCUGAAAGCCAACAAACUGCCAACUG----------------- --------(..((((((.(((.-(.((((((......)))))).)))).)))....(((((..(((((.......))))))))))........)))..)..----------------- ( -24.20, z-score = -1.99, R) >droYak2.chr2R 19369892 100 + 21139217 AAGGAACAAAGGGCUCUGGAGC-GAAAGUUGAACAGCUAACUUACUUCGAUAAACAGGCUUAAUUAGCGACCAAAGCUGAAAGCCAACAAACUGCCAACUG----------------- ...........(((..(((((.-..((((((......)))))).))))).......(((((..(((((.......))))))))))........))).....----------------- ( -22.40, z-score = -0.99, R) >droEre2.scaffold_4845 20768438 91 + 22589142 ---------GGGGCUCUGGAGC-GAAAGUUGAACAGCUAACUUACUUCGAUAAACAGGCUUAAUUAGCGACCAAAGCUGAAAGCCAACAAACUGCCAACUG----------------- ---------..(((..(((((.-..((((((......)))))).))))).......(((((..(((((.......))))))))))........))).....----------------- ( -22.40, z-score = -1.35, R) >droAna3.scaffold_13266 8039658 92 + 19884421 --------AAAGGCUACGGAGC-GAAAGUUGAACAGCUAACUUACUUCGAUAAACAGGCUUAAUUAGCGACCAAAGCUGAAAGCCGACAGACUGCCAACAG----------------- --------...(((..(((((.-..((((((......)))))).))))).......(((((..(((((.......))))))))))........))).....----------------- ( -24.80, z-score = -2.84, R) >dp4.chr3 10784936 87 - 19779522 --------AGGGGCU-----GU-GAAAGUUGAACAGCUAACUUACUUCGAUAAACAGGCUUAAUUAGCGACCAAAGCUGAAAGUCAACAGACUGUCAACUG----------------- --------.((((((-----((-.........))))))...................(((.....)))..))..((.(((.((((....)))).))).)).----------------- ( -19.20, z-score = -0.49, R) >droPer1.super_4 2846370 87 - 7162766 --------AGGGGCU-----GU-GAAAGUUGAACAGCUAACUUACUUCGAUAAACAGGCUUAAUUAGCGACCAAAGCUGAAAGUCAACAGACUGUCAACUG----------------- --------.((((((-----((-.........))))))...................(((.....)))..))..((.(((.((((....)))).))).)).----------------- ( -19.20, z-score = -0.49, R) >droWil1.scaffold_181141 2774183 101 + 5303230 ----------------AAAAACCAAAAAAGGAUGGUUAAAGUAACUCCGAUAAACAGGCUUAAUUAGCGAC-GAAGCUGAAAGUCAACAGACUGGCAACUACUGAAACUACCGACUGC ----------------.............((.(((((..((((.............(((((..(((((...-...))))))))))........(....)))))..)))))))...... ( -19.70, z-score = -1.63, R) >droVir3.scaffold_12875 18714195 76 + 20611582 -------------CUACU--GA-GAAAGUGGAGCACCAAACUAACGCCGAUAAACAGGCUUAAUUAGCGAC-AGAGCUGAAAGUCAACAGACU------------------------- -------------(((((--..-...)))))..............(((........)))....(((((...-...))))).((((....))))------------------------- ( -16.70, z-score = -2.01, R) >droMoj3.scaffold_6496 12371879 78 + 26866924 -----------GGCUGCU--GU-GAAAGUUAAGCACCAAACUAACGCCGAUAAACAGGCUUAAUUAGCGUC-AGAGCUGAAAGUCAACAGACU------------------------- -----------((.((((--..-........))))))........(((........)))....(((((...-...))))).((((....))))------------------------- ( -18.30, z-score = -0.81, R) >droGri2.scaffold_15245 4798533 79 + 18325388 -------------CUACUUGGCAGAAACUUGAAUACCAAACUAACGCCGAUAAACAGGCUUAAUUAGCGAC-AGAGCUGAAAGUCAACAGACU------------------------- -------------....(((((......(((.....)))......)))))......(((((..(((((...-...))))))))))........------------------------- ( -14.80, z-score = -1.78, R) >consensus _________GGGGCUAUGGAGC_GAAAGUUGAACAGCUAACUUACUUCGAUAAACAGGCUUAAUUAGCGACCAAAGCUGAAAGCCAACAGACUGCCAACUG_________________ ........................................................(((((..(((((.......))))))))))................................. (-10.80 = -10.55 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:45:52 2011