| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,384,958 – 19,385,048 |
| Length | 90 |
| Max. P | 0.690012 |
| Location | 19,384,958 – 19,385,048 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 64.31 |
| Shannon entropy | 0.65840 |
| G+C content | 0.48309 |
| Mean single sequence MFE | -28.13 |
| Consensus MFE | -11.84 |
| Energy contribution | -11.56 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.75 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.690012 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19384958 90 - 21146708 UUUUGCACAGUGUACAAGCACACAUACGC--CUCAGGCAAACAAGUGCAUGUGUGUGUGUG----CUUCCUUGUUUG--CUCGC--UUUAUUACCGCCUU- ....((..((((.((((((((((((((((--.....(((......)))..)))))))))))----))....))).))--)).))--..............- ( -26.40, z-score = -1.08, R) >droSim1.chr2R 17973553 92 - 19596830 -UUUUCGCAGUGUACAAACACACACACGC--CUGGGGCAAACAAGUGCGUGUGUGUGUGUG--UGCUUCCUUGUUUG--CUCGC--UUUAUUACCGCCUUU -.....((((.(((((.((((((((((((--((.(......).)).)))))))))))).))--)))........)))--)....--............... ( -31.70, z-score = -1.87, R) >droSec1.super_9 2673836 86 - 3197100 -UUCUCGCAGUGUACAAACACACAUACGC--CUGAGGCAAACAAGUGCGUGUGUGUGUGUG--------CUUGUUUG--CUCGC--UUUAUUACCGCCUUU -.....((((.((((..((((((((((((--((..(.....).)).)))))))))))))))--------)....)))--)....--............... ( -27.30, z-score = -1.46, R) >droYak2.chr2R 19352945 94 - 21139217 -UUCUCGCAGUGUAGCAACACACACACGC--UUGAGGCAAGCAAGUGCGUGUGUGCGUGUGUGUGUUUCCUUGUUUG--CUCGC--UUUAUUACCGCCUUU -.......((((.((((((((((((((((--...(.(((.((....)).))).))))))))))))).........))--)))))--).............. ( -31.30, z-score = -1.10, R) >dp4.chr3 10768218 95 + 19779522 ------AGAGCACACACACGCAUAUGCACUACUCGAGAGAGCCCCUGGGCGUGUGUAUGUGUUAGCCUGUUUGUUUGUUCUGGCCGCUUAGAACCGCUUUU ------(((((......((((((((((((...((....))(((....)))))))))))))))..............(((((((....))))))).))))). ( -31.50, z-score = -1.57, R) >droPer1.super_4 2829652 95 + 7162766 ------AGAGCACACACACGCAUAUGCACUACUCGAGAGCGCCCCUGGGCGUGUGUAUGUGUUAGCCUGUUUGUUUGUUCUGGCCGCUUAGAACCGCUUUU ------((((((((.(((.((((((((((..(....).(((((....))))))))))))))).....))).)))..(((((((....))))))).))))). ( -29.90, z-score = -0.76, R) >droWil1.scaffold_181141 2745493 86 - 5303230 -------AAACGCACUCAUACACGUGGGC-ACUUAGGAAUGCUUAACUGUGUGUGUGUUUUUCAGUUUGACUAUGUG----AGC--UUUAUUACCGCUUU- -------....((((.((((((..(((((-(........))))))..)))))).))))..................(----(((--.........)))).- ( -18.80, z-score = -0.02, R) >consensus _UU__CACAGUGUACAAACACACAUACGC__CUCAGGCAAGCAAGUGCGUGUGUGUGUGUGU_AGCUUCCUUGUUUG__CUCGC__UUUAUUACCGCCUUU .................((((((((((((.................))))))))))))........................................... (-11.84 = -11.56 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:45:49 2011