| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,382,757 – 19,382,814 |
| Length | 57 |
| Max. P | 0.652086 |
| Location | 19,382,757 – 19,382,814 |
|---|---|
| Length | 57 |
| Sequences | 8 |
| Columns | 71 |
| Reading direction | reverse |
| Mean pairwise identity | 68.05 |
| Shannon entropy | 0.56886 |
| G+C content | 0.35038 |
| Mean single sequence MFE | -8.59 |
| Consensus MFE | -4.18 |
| Energy contribution | -3.30 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 2.50 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.652086 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19382757 57 - 21146708 -----------UUUGA--CAGGGCGAGAGUCUAAAACAAUAAAAAGCAAUUAAUAUCAACAUUUAAAGAC- -----------.....--..((((....))))......................................- ( -5.20, z-score = -1.21, R) >droWil1.scaffold_181141 2743369 57 - 5303230 -----------UUUGU--CUGCCUGUGGACGAAAAACAAUGAAAACCAAUUAACAUGAACAUUUUAAGCC- -----------(((((--(((....)))))))).....................................- ( -6.20, z-score = -0.21, R) >droPer1.super_4 2827447 71 + 7162766 UUUGAGAAGCCCUUGGCCCUCGAGGUCACUCGAGGACCAAUGAAAGCAAUUAAAAUCAGCAAUUUAAAUCC (((((...(((.((((.(((((((....))))))).)))).)...))..)))))................. ( -19.00, z-score = -2.50, R) >dp4.chr3 10766011 71 + 19779522 UUUGAGAAGCCCUUGGCCCUCGAGGUCACUCGAGGACCAAUGAAAGCAAUUAAAAUCAGCAAUUUAAAUCC (((((...(((.((((.(((((((....))))))).)))).)...))..)))))................. ( -19.00, z-score = -2.50, R) >droEre2.scaffold_4845 20748841 57 - 22589142 -----------UUUGA--CAAGGCGAGAGUCUAAAACAAUAAAAAGCAAUUAAUAUCAACAUUCAAGGAC- -----------(((((--..((((....))))...........((....))...........)))))...- ( -5.50, z-score = -1.32, R) >droYak2.chr2R 19350795 57 - 21139217 -----------UUUGA--CAGGGCGAGAGGCUAACACAAUAAAAAGCAAUUAAUAUCUACAUUUAAGGCC- -----------.....--..((.(....).)).............((....(((......)))....)).- ( -3.40, z-score = 1.10, R) >droSec1.super_9 2671654 57 - 3197100 -----------UUUGA--CAGGGCGAGAGUCUAAAACAAUAAAAAGCAAUUAAUAUCAACAUUUAAAGAC- -----------.....--..((((....))))......................................- ( -5.20, z-score = -1.21, R) >droSim1.chr2R 17971382 57 - 19596830 -----------UUUGA--CAGGGCGAGAGUCUAAAACAAUAAAAAGCAAUUAAUAUCAACAUUUAAAGAC- -----------.....--..((((....))))......................................- ( -5.20, z-score = -1.21, R) >consensus ___________UUUGA__CAGGGCGAGAGUCUAAAACAAUAAAAAGCAAUUAAUAUCAACAUUUAAAGAC_ ....................((((....))))....................................... ( -4.18 = -3.30 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:45:47 2011