| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,744,701 – 3,744,832 |
| Length | 131 |
| Max. P | 0.578112 |
| Location | 3,744,701 – 3,744,832 |
|---|---|
| Length | 131 |
| Sequences | 4 |
| Columns | 132 |
| Reading direction | reverse |
| Mean pairwise identity | 88.59 |
| Shannon entropy | 0.18739 |
| G+C content | 0.36288 |
| Mean single sequence MFE | -32.77 |
| Consensus MFE | -22.99 |
| Energy contribution | -23.30 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.578112 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3744701 131 - 23011544 GCGAGGAAUUCGUGCAGCUCAAUGU-GUUCACAUUGACCUGGAAAAAUGUUCUAAAUUUGUAUGGAUAUUUACCCGCCGGGAAAUGUGAAUAGAGAUUUGGUUGUUAAAUAUUUAAAAUACUCGAUUUUGCC .((((((((....((((((...(.(-(((((((((..(((((..((((((((...........)))))))).....))))).)))))))))).).....)))))).....))))......))))........ ( -32.90, z-score = -1.93, R) >droSim1.chr2L 3699928 126 - 22036055 GCGAGGAAUUCGUGCAGCUCAAUGU-GUUCACAUUGACCUGGAAAAAUGUUCUAAAUUUUUAUGAAUGUUUACCC-----GGAAUGUGCAUUGAGUUUCUGCUGUUAAAUAUUUAAAAUACUCGCUUUUGCU ((.(((((((((((((..(((((((-....))))))).((((..((((((((...........))))))))..))-----))....)))).))))))))))).....................((....)). ( -32.80, z-score = -2.77, R) >droSec1.super_5 1840021 131 - 5866729 GCGAGGAAUUCGUGCAGCUCAAUGU-GUUCACAUUGACCUGGAAAAAUGUUCUAAAUUUUUAUGAAUGUUUACCCGCCGGGGAAUGUGCAUUAAGUUUCUGUUGUUAAAUAUUUAAAAUACUCGCUUUUGCU ((((((((...(((((..(((((((-....)))))))(((((..((((((((...........)))))))).....))))).....))))).....)))((((....)))).........)))))....... ( -31.50, z-score = -1.55, R) >droYak2.chr2L 3745793 130 - 22324452 GCGAGGAAUUUGUGCAGCUCCAUGUCGUUCACAUUGACCUGGAAAAAUGUUCUAAAUUUUUAUGGCUGUUUAGCCAAUGGGGAAUGUGUAUAGAGAUUUGGCUGUUAAAUAUUUAAAAUACUCGUUUUUG-- (((((..((((..((((((..((.((...((((((..(((((((.....)))))........(((((....)))))..))..))))))....)).))..))))))..........)))).))))).....-- ( -33.90, z-score = -2.07, R) >consensus GCGAGGAAUUCGUGCAGCUCAAUGU_GUUCACAUUGACCUGGAAAAAUGUUCUAAAUUUUUAUGAAUGUUUACCCGCCGGGGAAUGUGCAUAGAGAUUCGGCUGUUAAAUAUUUAAAAUACUCGCUUUUGCU (((((((((....(((((........((.((((((..(((((..((((((((...........))))))))..)))..))..)))))).)).........))))).....))))......)))))....... (-22.99 = -23.30 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:14:33 2011