| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,368,217 – 19,368,278 |
| Length | 61 |
| Max. P | 0.855953 |
| Location | 19,368,217 – 19,368,278 |
|---|---|
| Length | 61 |
| Sequences | 6 |
| Columns | 73 |
| Reading direction | reverse |
| Mean pairwise identity | 59.45 |
| Shannon entropy | 0.68317 |
| G+C content | 0.53386 |
| Mean single sequence MFE | -18.73 |
| Consensus MFE | -6.99 |
| Energy contribution | -6.05 |
| Covariance contribution | -0.94 |
| Combinations/Pair | 1.60 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.855953 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2R 19368217 61 - 21146708 AUAGCCACGUCCUUUC--UCCGGCUUUCCUUGCC-CGUCG-------GCCGGAGAAAG--UUUUCUUGCGGCA ...(((.((..(((((--(((((((..(......-.)..)-------)))))))))))--......)).))). ( -25.30, z-score = -3.67, R) >droPer1.super_4 2814119 71 + 7162766 GUGACUCAAACCUUUCCGUCUGGGUCCCGCUGUCACGGAAGUCUGACGUCAAAGGAAA--CUUUCUUGUUACA (((((...........((((.((.(.(((......))).).)).))))..((((....--))))...))))). ( -18.30, z-score = -0.77, R) >dp4.chr3 10751623 71 + 19779522 GUGACUCAAACCUUUCCGCCUGGGUCCCGCUGUCACGGAAGGCUGACGUCAAAGGAAA--CUUUCUUGUUACA (((((....((((........))))......))))).......(((((..((((....--))))..))))).. ( -17.90, z-score = -0.17, R) >droAna3.scaffold_13266 8008358 62 - 19884421 AUGCCCACUCGCCUUC-AUCCUUUUCUCCCU----CUGAA------CGUCAAAAGAAAGUUUUUCUCCUGGCA ................-..............----.....------.((((..((((.....))))..)))). ( -6.00, z-score = 0.02, R) >droSec1.super_9 2656993 61 - 3197100 AUAGCCUCGUCCCUUC--UCCGGCUUUCCUUGCC-UGUCA-------GCCGGGGAAAG--UUUUCUUGCGGCA ...(((.......(((--(((((((..(......-.)..)-------))))))))).(--(......))))). ( -20.90, z-score = -1.90, R) >droSim1.chr2R 17949659 61 - 19596830 AAAGCCUCGUCCUUUC--UCCGGCUUUCCUUGCC-CGUCA-------GCCGGGGAAAG--UUUUCUUGCGGCA ...(((.((..(((((--(((((((..(......-.)..)-------)))))))))))--......)).))). ( -24.00, z-score = -2.78, R) >consensus AUAGCCACGUCCUUUC__UCCGGCUCUCCCUGCC_CGGAA_______GCCAAAGAAAA__UUUUCUUGCGGCA ...............................................((((((((((....)))))).)))). ( -6.99 = -6.05 + -0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:45:39 2011