| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,363,787 – 19,363,878 |
| Length | 91 |
| Max. P | 0.529919 |
| Location | 19,363,787 – 19,363,878 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 63.93 |
| Shannon entropy | 0.69697 |
| G+C content | 0.52252 |
| Mean single sequence MFE | -23.20 |
| Consensus MFE | -11.77 |
| Energy contribution | -11.63 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.31 |
| Mean z-score | -0.35 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.529919 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19363787 91 + 21146708 UUCUGUACUCACAUAGCGACUGGUAGUACUGUUUGUGCCACCAGCUCAACUGUGGUUUCGGCGACUCGGAGCGAAAUAGGGAGGCCCGCGA .......(((.(((((.(((((((.((((.....)))).))))).))..)))))(((((((....)))))))........)))........ ( -27.10, z-score = 0.41, R) >droSim1.chr2R 17945231 70 + 19596830 UUCUGUACUCACAUAACGACUGGUAGUACUGUUUGUGCCACCAACUCAACUGUCGUUUUGGCGACUCGGA--------------------- .((((...((.((.((((((((((.((((.....)))).))))........)))))).))..))..))))--------------------- ( -19.20, z-score = -1.49, R) >droSec1.super_9 2652614 70 + 3197100 UUGUGCACUCACAUAGCGACUGGUAGUACUGUUUGUGCCACCAGCUCAACUGUCGUUUUGGCGACUCGGA--------------------- .((((....))))....(((((((.((((.....)))).))))).))....(((((....))))).....--------------------- ( -20.80, z-score = -0.59, R) >droYak2.chr2R 19330835 88 + 21139217 ---UGUGCUCACAUAGCGACUGGUAGUACUGUUUGUGCCACCAGCUCAACUGCCGUUGUGGCGACUCGGAGCGAAAUAAAGUGGCACCCGA ---.((((.(((........((((.((((.....)))).))))((((...((((.....)))).....))))........))))))).... ( -29.10, z-score = -0.69, R) >droEre2.scaffold_4845 20730843 90 + 22589142 -CCUGUACUCACAUAGCGACUGGUAGUACUGUUUGUGCCACCAGCUCAACUGCCGUCUUGGCGACUCGGAGCGCAGUAAAGUGGUCCCAGA -.(((...((((.....(((((((.((((.....)))).))))).)).((((((..(..(....)..)..).)))))...))))...))). ( -28.40, z-score = -0.28, R) >droWil1.scaffold_181141 2714027 69 + 5303230 -----AACUCACAGCGUAUCUGAUAGUAUUGUCUCUGCCACCAGCUCAAGGGCUUUUGUGGCCUAUCCACUUGA----------------- -----................(((((..........(((((.((((....))))...)))))))))).......----------------- ( -14.10, z-score = 0.30, R) >droAna3.scaffold_13266 8004171 81 + 19884421 ------ACUCACAUCGGCGUUGGUAGUACUGACGCUGCCACCAGGAAAGAGGUCUUUGGGGCCAUUCCCGGCGUAUUAUAUCCCCAA---- ------.(((....((((((..(.....)..))))))((....))...)))....((((((((......)))(........))))))---- ( -23.70, z-score = -0.08, R) >consensus ___UGUACUCACAUAGCGACUGGUAGUACUGUUUGUGCCACCAGCUCAACUGUCGUUUUGGCGACUCGGAGCGAA_UA_____________ ...................(((((.((((.....)))).)))))......((((.....))))............................ (-11.77 = -11.63 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:45:38 2011