| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,338,183 – 19,338,239 |
| Length | 56 |
| Max. P | 0.995138 |
| Location | 19,338,183 – 19,338,239 |
|---|---|
| Length | 56 |
| Sequences | 8 |
| Columns | 62 |
| Reading direction | forward |
| Mean pairwise identity | 71.16 |
| Shannon entropy | 0.56393 |
| G+C content | 0.42534 |
| Mean single sequence MFE | -15.20 |
| Consensus MFE | -8.22 |
| Energy contribution | -8.88 |
| Covariance contribution | 0.66 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.77 |
| SVM RNA-class probability | 0.995138 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19338183 56 + 21146708 ------UUCCUUUGCAUCGCUUUCCAUUGCUGGCUAGACGAAGUCUGGCCACUGGAUUUAUU ------.(((........((........))(((((((((...)))))))))..)))...... ( -16.90, z-score = -2.48, R) >droEre2.scaffold_4845 20703561 56 + 22589142 ------UUCCUUUGCAUCGCCUUCCACAGCUGGCUAGACAAAGUCUGGCCGCUGAAUUUAUU ------....................((((.((((((((...))))))))))))........ ( -18.60, z-score = -3.23, R) >droYak2.chr2R 19304570 56 + 21139217 ------UUCCUUUGCAUUGCUUUCCACAGCUGGCUAGACAAAGUCUGGCCGCUGAAUUUAUU ------....................((((.((((((((...))))))))))))........ ( -18.60, z-score = -3.11, R) >droSec1.super_9 2627305 56 + 3197100 ------UUCCUUUGCAUCGCCAUCCAUAGCUGGCUAGACGAAGUCUGGCCACUGAAUUUAUU ------....................(((.(((((((((...))))))))))))........ ( -15.00, z-score = -2.01, R) >droSim1.chr2R 17918725 56 + 19596830 ------UUCCUUUGCAUCGCCAUCCAUAGCUGGCUAGACGAAGUCUGGCCACUGAAUUUAUU ------....................(((.(((((((((...))))))))))))........ ( -15.00, z-score = -2.01, R) >droPer1.super_4 2783630 60 - 7162766 UCAGCAUUGUAUUUGGU--CUCUCAUUUGGUGGCUAGACAUUGUCUGGCUUUUGAAUUUAUU .................--.....(((..(.((((((((...)))))))).)..)))..... ( -12.70, z-score = -1.27, R) >droWil1.scaffold_181141 2678713 56 + 5303230 ------UUGAUUGUUGUUAUGUUCACUGACUGGCUAGACAUUGUCUGGGCUAGGAAUUUAUU ------.......................((((((((((...)))).))))))......... ( -10.70, z-score = -0.72, R) >droVir3.scaffold_12875 18634949 53 + 20611582 ------UUGCUUUAUGU-AUUUUCUGCCAUUGGCUAGACAAUGGCCGA--CAUAAAUUUAUU ------....(((((((-.......(((((((......)))))))..)--))))))...... ( -14.10, z-score = -3.06, R) >consensus ______UUCCUUUGCAUCGCUUUCCAUAGCUGGCUAGACAAAGUCUGGCCACUGAAUUUAUU ...............................((((((((...))))))))............ ( -8.22 = -8.88 + 0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:45:37 2011