| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,319,696 – 19,319,764 |
| Length | 68 |
| Max. P | 0.976171 |
| Location | 19,319,696 – 19,319,764 |
|---|---|
| Length | 68 |
| Sequences | 7 |
| Columns | 68 |
| Reading direction | forward |
| Mean pairwise identity | 71.12 |
| Shannon entropy | 0.58411 |
| G+C content | 0.44902 |
| Mean single sequence MFE | -14.93 |
| Consensus MFE | -7.45 |
| Energy contribution | -7.84 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.95 |
| SVM RNA-class probability | 0.976171 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19319696 68 + 21146708 UGGCCAGGCCAAAUCAAGCCGGCAACGAAGCGUCUCACGUUUUGUUUUCUUCUUAUUAUACCCAAUUU ..(((.(((........))))))(((((((((.....)))))))))...................... ( -17.50, z-score = -2.73, R) >droSim1.chr2R 17900350 67 + 19596830 UGGCCAGGCCAAAUCAAGCCGGCAACGAAGCGUCUCACGUUUUGUUUUCUUCUUAUUAUACCCAAUU- ..(((.(((........))))))(((((((((.....))))))))).....................- ( -17.50, z-score = -2.78, R) >droSec1.super_9 2609124 67 + 3197100 UGGCCAGGCCAAAUCAAGCCGGCAACGAAGCGUCUCACGUUUUGUUUUCUUCUUAUUAUACCCAAUA- ..(((.(((........))))))(((((((((.....))))))))).....................- ( -17.50, z-score = -2.75, R) >droYak2.chr2R 19286469 62 + 21139217 -----UGGCCAAUUCAAGCCGGCAACGAAGCGUCUCACGUUUUGUUUUCUUCUUAUUAUAUUCCAUU- -----.(((........)))((.(((((((((.....))))))))).))..................- ( -13.60, z-score = -2.68, R) >droEre2.scaffold_4845 20685939 62 + 22589142 -----UGGCCAAUUCAAGCCGGCAACGAAGCGUCUCACGUUUUGUUUUCUUCUUAUUAAAUUCCAUU- -----.(((........)))((.(((((((((.....))))))))).))..................- ( -13.60, z-score = -2.49, R) >droWil1.scaffold_181141 2650637 64 + 5303230 -CGUCACUACGAUUCAAGCCGGCAACGAAGCGUCUCACGUUU--UUUUGUUUCUGUUGUGCUUCUCC- -.(.(((.((((..((((.((....))(((((.....)))))--.))))..)).)).))))......- ( -12.50, z-score = -0.39, R) >droMoj3.scaffold_6496 12259407 64 + 26866924 CGGCAAAGGGCAUAGCAAACAGAGACGAAGCGACUCUCGCUUGGCGGGUUUUCGAUUUCAGUUU---- ..((.....))...........(((((((((((..(((((...)))))...))).)))).))))---- ( -12.30, z-score = 0.97, R) >consensus _GGCCAGGCCAAUUCAAGCCGGCAACGAAGCGUCUCACGUUUUGUUUUCUUCUUAUUAUACUCAAUU_ ...............(((..((.(((((((((.....))))))))).))..))).............. ( -7.45 = -7.84 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:45:35 2011