| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,740,357 – 3,740,436 |
| Length | 79 |
| Max. P | 0.500000 |
| Location | 3,740,357 – 3,740,436 |
|---|---|
| Length | 79 |
| Sequences | 5 |
| Columns | 79 |
| Reading direction | forward |
| Mean pairwise identity | 96.94 |
| Shannon entropy | 0.05483 |
| G+C content | 0.45527 |
| Mean single sequence MFE | -24.33 |
| Consensus MFE | -21.40 |
| Energy contribution | -21.44 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2L 3740357 79 + 23011544 GAGCCUUUUAUUUUAGGGAAGCCCAGAAGCCAAUAAUAAAAAUGUUUAUGUGGGUUUUCAGGGCUCAGCCGCUGACGCU (((((((.........(((((((((.((((.............))))...))))))))))))))))....((....)). ( -21.52, z-score = -0.62, R) >droSim1.chr2L 3695628 78 + 22036055 GAGCCUUUUAUUUUAGGGAAGCCCAGAAGCCAAUAAUAAAAAUGUUUAUGUGGGUUUCC-GGGCUCAGCGGAUGACGCU ((((((..........(((((((((.((((.............))))...)))))))))-))))))((((.....)))) ( -27.52, z-score = -2.81, R) >droSec1.super_5 1835766 78 + 5866729 GAGCCUUUUAUUUUAGGGAAGCCCAGAAGCCAAUAAUAAAAAUGUUUAUGUGGGUUUCC-GGGCUCAGCCGCUGACGCU ............((((((.(((((.((((((....(((((....)))))...)))))).-)))))...)).)))).... ( -24.20, z-score = -1.42, R) >droYak2.chr2L 3741395 78 + 22324452 GAGCCUUUUAUUUUAGGGAAGCCCAGAAGCCAAUAAUAAAAAUGUUUAUGUGGGUUUCC-GGGCUCAGCCGCUGACGCU ............((((((.(((((.((((((....(((((....)))))...)))))).-)))))...)).)))).... ( -24.20, z-score = -1.42, R) >droEre2.scaffold_4929 3785745 78 + 26641161 GAGCCUUUUAUUUUAGGGAAGCCCAGAAGCCAAUAAUAAAAAUGUUUAUGUGGGUUUCC-GGGCUACGCCGCUGACGCU ............((((((.(((((.((((((....(((((....)))))...)))))).-)))))...)).)))).... ( -24.20, z-score = -1.55, R) >consensus GAGCCUUUUAUUUUAGGGAAGCCCAGAAGCCAAUAAUAAAAAUGUUUAUGUGGGUUUCC_GGGCUCAGCCGCUGACGCU ((((((..........(((((((((.((((.............))))...))))))))).)))))).((.......)). (-21.40 = -21.44 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:14:32 2011