| Sequence ID | dm3.chr2L |
|---|---|
| Location | 431,147 – 431,333 |
| Length | 186 |
| Max. P | 0.684159 |
| Location | 431,147 – 431,333 |
|---|---|
| Length | 186 |
| Sequences | 5 |
| Columns | 187 |
| Reading direction | reverse |
| Mean pairwise identity | 96.41 |
| Shannon entropy | 0.06285 |
| G+C content | 0.44254 |
| Mean single sequence MFE | -49.35 |
| Consensus MFE | -44.23 |
| Energy contribution | -43.99 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.684159 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 431147 186 - 23011544 AGGUCUCGAAUAAAUUCAUUAAACCGAAUUUAUAUUUCCCAGUGGAAAGCACAUGCUUUGCUGUCCC-GACGAUCUGUUCGGUUACCGUUGACGUUUAGCGAUAUACUGAUUUUGCCCCUGCUCAGCGAAACCGAACACAACGAAGAUCGAGUCGAGAUUUCGUUAAAACUUAACGAAGCCGCGUUU .((((((((((((((((........))))))))........(.(((.((((.......)))).))))-..((((((((((((((..((((((.((...((((..........))))....)))))))).)))))))).......))))))..))))))((((((((.....))))))))))...... ( -53.91, z-score = -2.95, R) >droSim1.chr2L 437685 186 - 22036055 AGGUCUCGAAUAAAUUCAUUAAACCGAAUUCAUAUUUCCCAGUGGAAAGCACAUGCUUUGCUGUCCC-GACGAUCUGUUCGGUUACCGUUGACGUUUAGCGAUAUACUGAUUUUGCCCCUGCGCAGCGAAACCGAACACAACGAAGAUCGAGUCGAGAUUUCGUUAAAACUUAACGAAGCCGCGUUU .((((((((...(((((........)))))...........(.(((.((((.......)))).))))-..((((((((((((((..(((((.(((...((((..........))))....)))))))).)))))))).......))))))..))))))((((((((.....))))))))))...... ( -51.31, z-score = -1.94, R) >droSec1.super_14 415081 186 - 2068291 AGGUCUCGAAUAAAUUCAUUAAACCGAAUUCAUAUUUCCCAGUGGAAAGCACAUGCUUUGCUGUCCC-GACGAUCUGUUCGGUUACCGUUGACGUUUAGCGAUAUACUGAUUUUGCCCCUGCGCAGCGAAACCGAACACACCGAAGAUCGAGUUGAGAUUUCGUUAAAACUUAACGAAGCCGCGUUU .((((((((...(((((........)))))...........(.(((.((((.......)))).))))-..((((((((((((((..(((((.(((...((((..........))))....)))))))).)))))))).......))))))..))))))((((((((.....))))))))))...... ( -49.21, z-score = -1.64, R) >droYak2.chr2L 415849 186 - 22324452 AGGUUUCGAGUAAAUUCAUUAAACCGAAUUCAUAUUUCCCAGUGGAAACCACAUGCUUUCCUGUGCC-GACGAUCUGUUCGGUUACCGUUGACGUUUAGCGAUAUACUGAUUUUGCCCCUGCGUAGCGAAACCGAACACAACGAAGAUCGAGUCGAGAUUUCGUUAAAACCUAACGAAGCCGCGUUU .((((((.....(((((........)))))(((........)))))))))..((((..........(-((((((((((((((((..(((((.(((...((((..........))))....)))))))).)))))))).......)))))..)))).(..(((((((.....)))))))..))))).. ( -47.01, z-score = -1.13, R) >droEre2.scaffold_4929 483396 187 - 26641161 AGGUUUCGAGUAAAUUCAUUAAACCGAAUUCAUAUUUCCCAGUGAAAACCACAUGCUUUUCUGUCCCGGACGAUCUGUUCGGUUACCGUUGACGUUUAGCGAUAUACUGAUUUUGCCCCUGCGUAGCGAAACCGAACACAACGAAGAUCGAGUCGAGAUUUCGUUAAAACUCAACGAAGCCGCGUUU .((((((((((((((((........)))))...........(((.....))).)))).....(((.(((.((((((((((((((..(((((.(((...((((..........))))....)))))))).)))))))).......))))))..))).)))...............)))))))...... ( -45.31, z-score = -0.54, R) >consensus AGGUCUCGAAUAAAUUCAUUAAACCGAAUUCAUAUUUCCCAGUGGAAAGCACAUGCUUUGCUGUCCC_GACGAUCUGUUCGGUUACCGUUGACGUUUAGCGAUAUACUGAUUUUGCCCCUGCGCAGCGAAACCGAACACAACGAAGAUCGAGUCGAGAUUUCGUUAAAACUUAACGAAGCCGCGUUU .((((((((((.(((((........))))).))......(((..((..((....))))..))).......((((((((((((((..(((((.(((...((((..........))))....)))))))).)))))))).......))))))..))))))((((((((.....))))))))))...... (-44.23 = -43.99 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:05:45 2011