| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,317,012 – 19,317,110 |
| Length | 98 |
| Max. P | 0.939013 |
| Location | 19,317,012 – 19,317,110 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 88.52 |
| Shannon entropy | 0.20974 |
| G+C content | 0.43364 |
| Mean single sequence MFE | -24.08 |
| Consensus MFE | -20.17 |
| Energy contribution | -20.62 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.45 |
| SVM RNA-class probability | 0.939013 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19317012 98 - 21146708 ----------CGUUAAGCCCUCUUUAAUUGCAGCUAAACUCUGCGAAUGAACCUUGUUCAUUUCU-CCAGAGCACUUGGCGUAUUAUCUCAAUUACGGGUUAGCUAACC ----------.(((((.(((............(((((.(((((.((((((((...))))))))..-.)))))...)))))(((..........)))))))))))..... ( -25.20, z-score = -2.61, R) >droSim1.chr2R 17897650 98 - 19596830 ----------CGUUAAGCCCUCUUUAAUUGCAGCUAAACUCUGCGAAUGAACCUUGUUCAUUUCU-CCAGAGCACUUGGCGUAUUAUCUCAAUUACGGGUUAGCUAACC ----------.(((((.(((............(((((.(((((.((((((((...))))))))..-.)))))...)))))(((..........)))))))))))..... ( -25.20, z-score = -2.61, R) >droSec1.super_9 2606377 98 - 3197100 ----------CGUUAAGCCCUCUUUAAUUGCAGCUAAACUCUGCGAAUGAACCUUGUUCAUUUCU-CCAGAGCACUUGGCGUAUGAUCUCAAUUACGGGUUAGCUAACC ----------.(((((.(((............(((((.(((((.((((((((...))))))))..-.)))))...)))))(((((....))..)))))))))))..... ( -25.40, z-score = -2.30, R) >droYak2.chr2R 19283493 108 - 21139217 CCUUUCCACUCGUUGAGCCCUCUUUAAUUGCAGCUAAACUCUGCGAAUGAACCUUGUUCAUUUCU-CCAGAGCACUUGGCGUAUUAUCUCAAUUACGGGUUUGCUAACC ..............((((((............(((((.(((((.((((((((...))))))))..-.)))))...)))))(((..........)))))))))....... ( -24.80, z-score = -2.15, R) >droEre2.scaffold_4845 20683123 98 - 22589142 ----------CGUUGAGCCCUCUUUAAUUGCAGCUAAACUCUGCGAAUGAACCUUGUUCAUUUCU-CCAGAGCACUUGGCGUAUUAUCUCAAUUACGGGUUAGCUAACC ----------.(((((.(((............(((((.(((((.((((((((...))))))))..-.)))))...)))))(((..........)))))))))))..... ( -25.30, z-score = -2.27, R) >droAna3.scaffold_13266 7950539 97 - 19884421 ----------AGCU--GCCCAUUUUAAUUGGUGUUUAACUCUGCCAUUGAACUUUGUUUAUUUCUCCCAGAGCACUUGGCGUAUAAUCUCAGUUACUGCCCAGCUAACG ----------((((--(..((...((((((..(((......(((((.....(((((...........)))))....)))))...)))..)))))).))..))))).... ( -18.60, z-score = -0.75, R) >consensus __________CGUUAAGCCCUCUUUAAUUGCAGCUAAACUCUGCGAAUGAACCUUGUUCAUUUCU_CCAGAGCACUUGGCGUAUUAUCUCAAUUACGGGUUAGCUAACC ...........((((.((((............(((((.(((((.((((((((...))))))))....)))))...)))))(((..........)))))))))))..... (-20.17 = -20.62 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:45:33 2011