| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,314,360 – 19,314,456 |
| Length | 96 |
| Max. P | 0.842429 |
| Location | 19,314,360 – 19,314,456 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 80.74 |
| Shannon entropy | 0.37487 |
| G+C content | 0.52251 |
| Mean single sequence MFE | -31.25 |
| Consensus MFE | -23.32 |
| Energy contribution | -22.72 |
| Covariance contribution | -0.60 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.842429 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19314360 96 + 21146708 CGAUCCCACAGACCAGGUUUCGUUGCUCCACCAUUUCGGCCAUCAAAGUUAUAUGGCUUUGAGCCGGCGAGGAGUUGGGUGCGCAACGAGACUGCA ...............(((((((((((..(((((((((.(((.((((((((....))))))))...)))..)))))..)))).)))))))))))... ( -37.20, z-score = -2.70, R) >droAna3.scaffold_13266 7948343 89 + 19884421 ------CGGAUGCCAGGUUUCAUUGUUCUGUGCACUCGGGCAUUAAAAUUAUAUUGCUUUAAUCCAAUGAUAAGUCGGAUAGCCAAU-AAAGUGCA ------((..(((((((.........)))).)))..)).(((((....((((...(((...((((.((.....)).)))))))..))-))))))). ( -18.50, z-score = 0.07, R) >droEre2.scaffold_4845 20680546 94 + 22589142 CGAUCCC--AGACCAGGUAUCGUUGCCCCACCGUUUCGGCCAUCAAAGGUUUAUGGCUUUGAGCCGGAGAGGAGUUGGGUGCACAAGGAAACUGCA ((((.((--......)).)))).(((((((((.(((((((..((((((.(....).))))))))))))).))...)))).)))..((....))... ( -33.40, z-score = -1.43, R) >droYak2.chr2R 19280756 94 + 21139217 CGAUCCC--AGACCAGGUUUCAUUGCUCCGCCGUUGCGGCCAUCAAAGUUAUAUGGCUUUCAGCCGGAGCGGAGUUGGGUGCACAACGAAACUGCA .......--......((((((.((((((((..((((.((((((.........))))))..)))))))))))).((((......))))))))))... ( -31.60, z-score = -1.01, R) >droSec1.super_9 2604100 96 + 3197100 CGAUCGCACAGACCAGGUUUCGUUGCUCCACCAUUUCGGCCAUCAAAGUUAUAUGGCUUUGAGCCGGCGAGGAGUUGGGUGCACAACGAGACUGCA ...............((((((((((...(((((((((.(((.((((((((....))))))))...)))..)))))..))))..))))))))))... ( -33.40, z-score = -1.79, R) >droSim1.chr2R 17895028 96 + 19596830 CGAUCGCACAGACCAGGUUUCGUUGCUCCACCAUUUCGGCCAUCAAAGUUAUAUGGCUUUGAGCCGGCGAGGAGUUGGGUGCACAACGAGACUGCA ...............((((((((((...(((((((((.(((.((((((((....))))))))...)))..)))))..))))..))))))))))... ( -33.40, z-score = -1.79, R) >consensus CGAUCCCACAGACCAGGUUUCGUUGCUCCACCAUUUCGGCCAUCAAAGUUAUAUGGCUUUGAGCCGGCGAGGAGUUGGGUGCACAACGAAACUGCA ...............((((((((((.((((((...(((((..(((((((......))))))))))))...))...))))....))))))))))... (-23.32 = -22.72 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:45:32 2011