| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,271,431 – 19,271,529 |
| Length | 98 |
| Max. P | 0.599351 |
| Location | 19,271,431 – 19,271,529 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 68.15 |
| Shannon entropy | 0.62537 |
| G+C content | 0.57900 |
| Mean single sequence MFE | -31.40 |
| Consensus MFE | -16.89 |
| Energy contribution | -18.03 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.35 |
| Mean z-score | -0.59 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.599351 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19271431 98 - 21146708 CGAACCCUUGGAGAAGGUUCACUUCUACACCCUCACUGGCUGGGGUCACACCGCAGACUAUAAGCCCAGCCGCAUUCUCCAGGAGACCACUUUGCUUG ......((((((((((((..........)))......((((((((((........)))......)))))))...)))))))))............... ( -28.70, z-score = -1.16, R) >droSim1.chr2R 17854794 97 - 19596830 -CAGCCCUUGGAGAAGGUUCAGUUUUACACCCUCACUGGCUGGGGUCGCACCGCAGACGGUAAGCCCAGCCGCAUCCUCCAGGAGACCACUUUGUCUG -.....(((((((..(((..........)))......(((((((.(...((((....)))).).))))))).....)))))))((((......)))). ( -33.10, z-score = -0.83, R) >droSec1.super_9 2565891 97 - 3197100 -CAGCCUUUGGAGAAGGUUCAGUUUUACACCCUCACUGGCUGGGGUCGCACCGCAGACGGUAAGCCCAGCCGCAUUCUCCAGGAGACCACCUUGUCUG -.....((((((((((((..........)))......(((((((.(...((((....)))).).)))))))...)))))))))((((......)))). ( -33.00, z-score = -0.93, R) >droYak2.chr2R 19240327 96 - 21139217 --AGCCCCUGGAGAGAGUUCAGAGCUACACUCUCACGGGCUGGGGUGUCACCGGCGACGGUGACUUGAGCCGCAUCCUCCAAGAGACCUCUUUGGUUG --(((((...(((((.((........)).)))))..)))))(.((((((((((....)))))))....))).)...........((((.....)))). ( -38.80, z-score = -1.13, R) >droEre2.scaffold_4845 20641739 98 - 22589142 UCAGCGCUUGGAGAGAGUUCAGAGCUACACCAUCACUGGCUGGGGUACCAAAGGCGACAAUGUGCUCGCCCGCAUCCUCCAAGAGACCACUUUGCUUG ..(((((((((((.((((...((((.(((...((.((...(((....)))..)).))...)))))))....)).))))))))).........)))).. ( -26.40, z-score = 0.77, R) >dp4.chr3 16274894 89 + 19779522 ---------AGAUUCCAUUCAACAGUUUUCUGUGGCCGGCUGGGGCUGGACCGAAGCGGGUUCGUUUAGCCACGUUCUCAAGACGGCGAAUGUCACGC ---------......(((((.((((....)))).((((((((((..((((((......)))))))))))))..(((.....)))))))))))...... ( -28.40, z-score = -0.26, R) >consensus _CAGCCCUUGGAGAAGGUUCAGUUCUACACCCUCACUGGCUGGGGUCGCACCGCAGACGGUAAGCCCAGCCGCAUCCUCCAGGAGACCACUUUGCCUG ......(((((((...((........)).........(((((((.....((((....))))...))))))).....)))))))............... (-16.89 = -18.03 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:45:28 2011