| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,257,376 – 19,257,476 |
| Length | 100 |
| Max. P | 0.960048 |
| Location | 19,257,376 – 19,257,476 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 75.23 |
| Shannon entropy | 0.37772 |
| G+C content | 0.34042 |
| Mean single sequence MFE | -17.14 |
| Consensus MFE | -8.32 |
| Energy contribution | -8.80 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.78 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.960048 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19257376 100 + 21146708 AGAACAAAUAAGGAGGCAGCUUAAGAAAGCAAUUAAUAAAUCGGAGCCUUUUAAAAAGGAUUCGACGCAUGAUUCAAAAAAGGAUUCGACGCAUGAUUUG ....(((((......((.((((....))))..........(((((.((((((......((.(((.....))).))..)))))).))))).))...))))) ( -17.30, z-score = -0.65, R) >droEre2.scaffold_4845 20627700 76 + 22589142 AGAACAAAUAAGGAGACAGCUUAAACAAGCGUUUACAAGAUCGGAGUCUUUGAAAAAGGAUUUCACUCCUGAUUUG------------------------ ....(((((.(((((...((((....))))............(((((((((....))))))))).))))).)))))------------------------ ( -23.80, z-score = -4.37, R) >droYak2.chr2R 19226193 76 + 21139217 AGAACAAAUAAGGAAUCAACUUAAGCAAGCAAUUACUAGAUCGGAGCCUUUGAGAAAGGAUUCGACUCCUAAUUUG------------------------ ....(((((.((((.........((.((....)).))...(((((.((((.....)))).))))).)))).)))))------------------------ ( -14.60, z-score = -1.31, R) >droSec1.super_9 2551716 76 + 3197100 AGAACAAAUAAGGAGACAGCUUAAACAAGCAAUUAAUAAAUCGGAACCUUUAAAAAAGGAUUCGAAGAAUUAUUUG------------------------ ....((((((((....).((((....))))..........(((((.((((.....)))).)))))....)))))))------------------------ ( -16.10, z-score = -4.51, R) >droSim1.chr2R 17841416 76 + 19596830 AGAACAAAUAAGGAGACAGCUUAAACAAGCAAUUAAUAAAUCGGAACCUUUAAAAAAGGAUUCGAAGCAUGAUUUG------------------------ ....(((((..(....).((((....))))..........(((((.((((.....)))).)))))......)))))------------------------ ( -13.90, z-score = -3.07, R) >consensus AGAACAAAUAAGGAGACAGCUUAAACAAGCAAUUAAUAAAUCGGAGCCUUUAAAAAAGGAUUCGACGCAUGAUUUG________________________ ....(((((.........((((....))))..........(((((.((((.....)))).)))))......)))))........................ ( -8.32 = -8.80 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:45:26 2011