| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,245,230 – 19,245,301 |
| Length | 71 |
| Max. P | 0.719945 |
| Location | 19,245,230 – 19,245,301 |
|---|---|
| Length | 71 |
| Sequences | 6 |
| Columns | 71 |
| Reading direction | reverse |
| Mean pairwise identity | 75.40 |
| Shannon entropy | 0.47173 |
| G+C content | 0.36796 |
| Mean single sequence MFE | -12.38 |
| Consensus MFE | -6.93 |
| Energy contribution | -7.18 |
| Covariance contribution | 0.26 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.719945 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19245230 71 - 21146708 UGCACGUGCGAGUAUGGAACACAUACGAAAAGUUACGGAUUUUUCGAAAAGGCUGGACAAUUUGCAGGAUA ....(.((((((((((.....)))))((((((((...))))))))................))))).)... ( -16.30, z-score = -1.95, R) >droWil1.scaffold_181141 1008293 64 + 5303230 ------UAUAUCAAUUAAAAAAAUAAUACGAAUUG-GAAUUAUUCGAAAUGCUCCAGACACAUGAAAGAUA ------..((((................(((((..-.....)))))........((......))...)))) ( -4.40, z-score = 0.01, R) >droSim1.chr2R 17828947 71 - 19596830 UGCACGUGCGACUAUGGAACACAUACGAAAAGUUACGGAUUUUUCGAAAAGGCUGGACAAUUUGCAGGAUA ....(.(((((.((((.....))))(((((((((...)))))))))...............))))).)... ( -14.00, z-score = -1.29, R) >droSec1.super_9 2539578 71 - 3197100 UGCACGUGCGACUAUGGAACACAUACGAAAAGUUACGGAUUUUUCGAAAAGGCUGGACAAUUUGCAGGAUA ....(.(((((.((((.....))))(((((((((...)))))))))...............))))).)... ( -14.00, z-score = -1.29, R) >droYak2.chr2R 19213852 71 - 21139217 UGCACUUGAGAGUAUGGAACUCAUACGAAAAGUUACAGAUUUUUCGAAAAAGCUGGACAAAUUACAGGAUA ....((((.((((.....))))...(((((((((...)))))))))..................))))... ( -13.10, z-score = -1.81, R) >droEre2.scaffold_4845 20615615 71 - 22589142 UGCACAUGAGAGUAUGGAACUCAUACGAAGAAUUACAGAUUUUUCGAAAAAGCUGAUGAAAUUACAGGAUA ....(((.((.(((((.....)))))((((((((...)))))))).......)).)))............. ( -12.50, z-score = -2.07, R) >consensus UGCACGUGCGACUAUGGAACACAUACGAAAAGUUACGGAUUUUUCGAAAAGGCUGGACAAUUUGCAGGAUA ....(.(((((.((((.....))))(((((((((...)))))))))...............))))).)... ( -6.93 = -7.18 + 0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:45:24 2011