| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,222,388 – 19,222,480 |
| Length | 92 |
| Max. P | 0.667564 |
| Location | 19,222,388 – 19,222,480 |
|---|---|
| Length | 92 |
| Sequences | 8 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 64.62 |
| Shannon entropy | 0.74670 |
| G+C content | 0.54903 |
| Mean single sequence MFE | -20.07 |
| Consensus MFE | -7.55 |
| Energy contribution | -6.84 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.89 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.667564 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19222388 92 - 21146708 UCAUAAAAGCGGCGGUCGCAAUCUGCUGCGUCUUCAUUUCUGCGGCGCCACCGCC-----CGGAAAACAACCCUAAAAACCAUCCUAACCACCUAAC ........(((((((.......))))))).......((((((.((((....))))-----))))))............................... ( -23.30, z-score = -2.44, R) >droSim1.chr2R 17805421 91 - 19596830 UCAUAAAAGCGGCGGUCGCAAUCUGCUGCGUCUUCAUUUCUGCGGCGCCACCGCC-----CGGAAAAC-CCCCUAAAAACCACCCUAACCACCCACC ........(((((((.......))))))).......((((((.((((....))))-----))))))..-............................ ( -23.30, z-score = -2.32, R) >droSec1.super_9 2515346 91 - 3197100 UCAUAAAAGCGGCGGUCGCAAUCUGCUGCGUCUUCAUUUCUGCGGCGCCACCGCU-----CGGAAAAC-CCCCUAAAAACCACCCAAACCACCCACC ........(((((((.......))))))).......((((((.((((....))))-----))))))..-............................ ( -20.30, z-score = -1.15, R) >droYak2.chr2R 19188464 91 - 21139217 UCAUAAAAGCGGCGGUCGCAAUCUGCUGCGUCUUCAUUUCUGCGGCGCCACCACC-----CGGAAAACCCACCAAAAACCA-CCAAAGCCACCCAUU ..........((((((.((.....((((((..........)))))))).)))...-----.((.....))...........-.....)))....... ( -18.50, z-score = -0.22, R) >droEre2.scaffold_4845 20592936 92 - 22589142 UCAUAAAAGCGGCGGUCGCAAUCUGCUGCGUCUUCAUUUCUGCGGCGCCACCAGC-----CGGAAAACCCACCGAAAAGCACCCAGAACCACCCAGG ........(((((((.......)))))))........(((((.((.((.......-----(((........)))....)).)))))))......... ( -22.70, z-score = 0.02, R) >droAna3.scaffold_13266 8317465 97 + 19884421 UCAUAAAAGCGGCUGCCGCAAUAUGCUGCGUCUUCAAUUCUGCAGCAAUUCUGCCCCCUUCCGCCCACCCACGCAAAUAUCGCCCAUACGCCCCGUG ........((((..((.(((...(((((((..........)))))))....)))........((........))...............)).)))). ( -17.90, z-score = -0.60, R) >droWil1.scaffold_180699 2452291 84 + 2593675 UCAUAAAA-CAGCCA-CGCAAUCUGGUUUAACUUCGUUUCUG-GCCAGGAUUAG------CAUCAGCCCACCUCAGACCCCUUUCGAGUCAAC---- ........-......-.(((((((((((.(((...)))...)-)))).)))).)------)..............((((......).)))...---- ( -11.00, z-score = 0.82, R) >droMoj3.scaffold_6496 4944752 70 + 26866924 UCAUAAAA--UGCGG-CGCAAUCUGCUCCGACAGCUUGUUCAGGUUGU------------CGCAGAGUCGCUUUCGAUUCCGGUU------------ ........--(((((-.((.....)).))((((((((....)))))))------------))))((((((....)))))).....------------ ( -23.60, z-score = -2.12, R) >consensus UCAUAAAAGCGGCGGUCGCAAUCUGCUGCGUCUUCAUUUCUGCGGCGCCACCGCC_____CGGAAAACCCCCCUAAAAACCACCCAAACCACCCA_C ...........((....))....(((((((..........))))))).................................................. ( -7.55 = -6.84 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:45:20 2011