| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,203,930 – 19,203,990 |
| Length | 60 |
| Max. P | 0.678999 |
| Location | 19,203,930 – 19,203,990 |
|---|---|
| Length | 60 |
| Sequences | 8 |
| Columns | 73 |
| Reading direction | reverse |
| Mean pairwise identity | 72.92 |
| Shannon entropy | 0.49792 |
| G+C content | 0.55362 |
| Mean single sequence MFE | -21.22 |
| Consensus MFE | -12.26 |
| Energy contribution | -12.54 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.678999 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19203930 60 - 21146708 -------ACCG-GAGAAUGUGUGUAA-----AAGCGACUCAAAUUGCAGGUGUGGCAGCCACACCGCAGACUC -------....-......((.(((..-----..((((......)))).(((((((...)))))))))).)).. ( -18.40, z-score = -1.31, R) >droSim1.chr2R 17786882 60 - 19596830 -------ACCG-GAGAAUGUGUGUAA-----AAGCGACUCAAAUUGCAGGUGUGGCAGCCACACCGCAGACUC -------....-......((.(((..-----..((((......)))).(((((((...)))))))))).)).. ( -18.40, z-score = -1.31, R) >droSec1.super_9 2496927 60 - 3197100 -------AACG-GAGAAUGUGUGUAA-----AAGCGACUCAAAUUGCAGGUGUGGCAGCCACACCGCAGACUC -------....-......((.(((..-----..((((......)))).(((((((...)))))))))).)).. ( -18.40, z-score = -1.51, R) >droYak2.chr2R 19169698 60 - 21139217 -------ACCG-GUGAAUGUGUGUAA-----AAGCGACUCAAAUUGCAGGUAUGGCAGCCACACCGCAGACUC -------..((-(((...........-----..((((......)))).(((......))).)))))....... ( -13.20, z-score = 0.47, R) >droEre2.scaffold_4845 20570640 60 - 22589142 -------ACCG-GAGAAUGUGUGUAA-----GAGCGACUCAAAUUGCAGGUGUGGCAGCCACACCGCAGACUC -------....-......((.(((..-----..((((......)))).(((((((...)))))))))).)).. ( -18.40, z-score = -1.08, R) >droAna3.scaffold_13266 8299297 70 + 19884421 GUGUUCGAGCG-CAUGUUGCACAAAA--GCCAAGCAACUCGAAUUGCAGGUGUGGCAACCGCAACGCCGACAA ..(((((((.(-(.((..((......--)))).))..)))))))((..(((((.((....)).)))))..)). ( -20.80, z-score = -0.01, R) >dp4.chr3 16715921 72 + 19779522 AUGUUUGACUGUCUGGCUGCCUGGCACCCCCACGCGACACUUG-UGCAGGUGUGGCAGCCACACCACAGACUC ..(((((...((.((((((((..(((((..((((.......))-))..))))))))))))).))..))))).. ( -31.10, z-score = -2.31, R) >droPer1.super_2 5778912 72 + 9036312 AUGUUUGACUGUCUGGCUGCCUGGCACCCCCACGCGACGCUUG-UGCAGGUGUGGCAGCCACACCACAGACUC ..(((((...((.((((((((..(((((..((((.......))-))..))))))))))))).))..))))).. ( -31.10, z-score = -2.08, R) >consensus _______ACCG_GAGAAUGUGUGUAA_____AAGCGACUCAAAUUGCAGGUGUGGCAGCCACACCGCAGACUC .................................((((......)))).(((((((...)))))))........ (-12.26 = -12.54 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:45:19 2011