| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,177,650 – 19,177,780 |
| Length | 130 |
| Max. P | 0.984827 |
| Location | 19,177,650 – 19,177,780 |
|---|---|
| Length | 130 |
| Sequences | 5 |
| Columns | 134 |
| Reading direction | reverse |
| Mean pairwise identity | 86.98 |
| Shannon entropy | 0.23157 |
| G+C content | 0.38855 |
| Mean single sequence MFE | -34.04 |
| Consensus MFE | -30.26 |
| Energy contribution | -30.58 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.18 |
| SVM RNA-class probability | 0.984827 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19177650 130 - 21146708 GAAAAUAAUGGAAAAAAGGGCCAGCCAGAAUAUUUUGCCCGUCGGCUGUUGUCAGUUGAGCGGGCGGAAUGGUAAUUUUAUA----UAAAUCUGAUUUUGAGUUGGGAUUUAAAAAGAAAGAAAGUGUACUUUU ....................((((((((((((((((((((((((((((....))))))).)))))))))).(((......))----).......)))))).)))))..............(((((....))))) ( -34.30, z-score = -2.43, R) >droEre2.scaffold_4845 20545105 122 - 22589142 GAAAAUAAUGGAAAAAA-GGCCAGCCAGAAUAUUUUGCCCGACGGCUGUUGUCAGUUGAGCGGGCGGAAUGGAAAUGUUAUA----UAAAUCUGAAUUUGAGUUGGGAUUUAAGA----AGGAAGUGUGCU--- .................-(((((.((....(((((((((((.((((((....))))))..)))))))))))...........----(((((((.(((....))).)))))))...----.))...)).)))--- ( -34.30, z-score = -2.85, R) >droYak2.chr2R 19142193 122 - 21139217 GAAAAUAAUGGAGAAAAGGGGCAGCCGGAAUAUUUUGCCCGUCGGCUGUUGUCAGUUGAGCCGGCGGAAUGGAAAUUUUAUAUAUGUAAAUCUGAAUUUGAGUUGGGAUUUAAAAGUUUGCG------------ ....................((((.(....(((((((((.((((((((....))))))).).)))))))))...............(((((((.(((....))).)))))))...).)))).------------ ( -29.30, z-score = -0.53, R) >droSec1.super_9 2470711 130 - 3197100 GAAAAUAAUGGAAAAAAGGGCCAGCCAGAAUAUUUUGCCCGUCGGCUGUUGUCAGUUGAGCGGGCGGAAUGGUAAUUUCAUA----UAAAUUUUAAUUUGAGUUGGGAUUUAAAAGGAGAGAAAGUGUACUUUU .......((((((.....((....))....((((((((((((((((((....))))))).)))))))))))....)))))).----(((((((((((....)))))))))))........(((((....))))) ( -36.40, z-score = -2.95, R) >droSim1.chr2R 17760789 130 - 19596830 GAAAAUAAUGGAAAAAAGGGCCAGCCAGAAUAUUUUGCCCGUCGGCUGUUGUCAGUUGAGCGGGCGGAAUGGUAAUUUUAUA----UAAAUCUGAAUUUGAGUUGGGAUUUAAAAGGAAAGAAAGUGUACUUUU .......((((((.....((....))....((((((((((((((((((....))))))).)))))))))))....)))))).----(((((((.(((....))).)))))))........(((((....))))) ( -35.90, z-score = -2.88, R) >consensus GAAAAUAAUGGAAAAAAGGGCCAGCCAGAAUAUUUUGCCCGUCGGCUGUUGUCAGUUGAGCGGGCGGAAUGGUAAUUUUAUA____UAAAUCUGAAUUUGAGUUGGGAUUUAAAAGGAAAGAAAGUGUACUUUU .......((((((.....((....))....((((((((((((((((((....))))))).)))))))))))....)))))).....(((((((.(((....))).)))))))...................... (-30.26 = -30.58 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:45:17 2011