| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,176,680 – 19,176,740 |
| Length | 60 |
| Max. P | 0.746414 |
| Location | 19,176,680 – 19,176,740 |
|---|---|
| Length | 60 |
| Sequences | 6 |
| Columns | 61 |
| Reading direction | forward |
| Mean pairwise identity | 78.67 |
| Shannon entropy | 0.41783 |
| G+C content | 0.50509 |
| Mean single sequence MFE | -11.97 |
| Consensus MFE | -10.34 |
| Energy contribution | -9.87 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.29 |
| Mean z-score | -0.78 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.746414 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19176680 60 + 21146708 UUGUAUCGGUAGCUCCAGCUCCGCUAU-CCCAGCUCAUUUUCCACCUGCAGAAAUAGUAUG (((((..((.(((....)))))(((..-...)))............))))).......... ( -9.30, z-score = -0.52, R) >droSim1.chr2R 17759909 60 + 19596830 UUGUAUCGGUAGCUCCAGCUCCGCUUU-CCCAGCUCAUUUUCCACGCGGAGAAAAAGUUUG ......(((.(((....))))))....-...((((..((((((....))))))..)))).. ( -13.60, z-score = -1.19, R) >droSec1.super_9 2469814 60 + 3197100 UUGUAUCGGUAGCUCCAGCUCCGCUUU-CGCAGCUCAUUUUCCACGUGGAGAAAAAGUUUG .......((.(((....)))))((...-.))((((..((((((....))))))..)))).. ( -14.20, z-score = -1.08, R) >droYak2.chr2R 19141205 61 + 21139217 UUGUAUCGGUAGCACCAGCUCCGCUUUUCCCAGCUCAUUUUCCACCUGGAGAAAAAGUUUG ......(((.(((....))))))........((((..((((((....))))))..)))).. ( -13.70, z-score = -1.70, R) >droEre2.scaffold_4845 20544254 59 + 22589142 UUGUAUCGGCAGC-CCAGCUCCGCUUU-CCCAGCUCAUUUUCCACCUGGAGAAAAAGUUUC ......(((.(((-...))))))....-...((((..((((((....))))))..)))).. ( -12.10, z-score = -0.88, R) >droAna3.scaffold_13266 8271832 50 - 19884421 UUGUAUUGGUAGCUGCAGUUCCGCCAG---UGGCCCCCCUCCUACAGAGAGAG-------- (((((..((..((..(..........)---..))..))....)))))......-------- ( -8.90, z-score = 0.71, R) >consensus UUGUAUCGGUAGCUCCAGCUCCGCUUU_CCCAGCUCAUUUUCCACCUGGAGAAAAAGUUUG .......((.(((....)))))(((......)))...((((((....))))))........ (-10.34 = -9.87 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:45:16 2011