| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,144,665 – 19,144,715 |
| Length | 50 |
| Max. P | 0.988378 |
| Location | 19,144,665 – 19,144,715 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 94.67 |
| Shannon entropy | 0.07346 |
| G+C content | 0.28000 |
| Mean single sequence MFE | -8.07 |
| Consensus MFE | -8.51 |
| Energy contribution | -8.07 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.85 |
| Structure conservation index | 1.05 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.32 |
| SVM RNA-class probability | 0.988378 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19144665 50 - 21146708 CGAAAUAAAUGAACUCAAAAGUGAAUGAAACAUUUUGGGUUACUUUAAGA .....((((..(((((((((((.......)).)))))))))..))))... ( -8.80, z-score = -2.22, R) >droSim1.chr2R 17726551 50 - 19596830 CGAAAUAAAUGAACUCAGAGGUAAAUUAAACAUUUUGGGUUACUUUAAGA .....((((..(((((((((((.......)).)))))))))..))))... ( -7.70, z-score = -1.66, R) >droSec1.super_9 2438062 50 - 3197100 CGAAAUAAAUGAACUCAGAGGUAAAUUAAACAUUUUGGGUUACUUUAAGA .....((((..(((((((((((.......)).)))))))))..))))... ( -7.70, z-score = -1.66, R) >consensus CGAAAUAAAUGAACUCAGAGGUAAAUUAAACAUUUUGGGUUACUUUAAGA .....((((..(((((((((((.......)).)))))))))..))))... ( -8.51 = -8.07 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:45:12 2011